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System and method for improving the accuracy of DNA sequencing and error probability estimation through application of a mathematical model to the analysis of electropherograms

机译:通过将数学模型应用于电泳图分析来提高DNA测序和错误概率估计的准确性的系统和方法

摘要

A system and method for improving the accuracy of DNA sequencing and error probability estimation through application of a mathematical model to the analysis of electropherograms. The method includes processing a plurality of information obtained from a base calling system and creating a plurality of refined base calls using a plurality of original base calls and a plurality of intrinsic peak characteristics. A quality value is also assigned to each of the plurality of refined base calls using the plurality of intrinsic peak characteristics. Processing comprises detecting a plurality of peaks, expanding the plurality of peaks, and resolving the plurality of expanded peaks. Resolving may include fitting the plurality of expanded peaks using a model of a peak shape. A peak resolution parameter is calculated and used in processing. The system may also be trained.
机译:一种通过将数学模型应用于电泳图分析来提高DNA测序和错误概率估计的准确性的系统和方法。该方法包括处理从基本呼叫系统获得的多个信息,并使用多个原始基本呼叫和多个固有峰值特征来创建多个精炼基本呼叫。还使用多个固有峰值特性将质量值分配给多个精炼碱基调用的每一个。处理包括检测多个峰,扩展多个峰以及解析多个扩展的峰。解析可以包括使用峰形状的模型拟合多个扩展峰。计算峰分辨率参数并将其用于处理中。该系统也可以被训练。

著录项

  • 公开/公告号US6681186B1

    专利类型

  • 公开/公告日2004-01-20

    原文格式PDF

  • 申请/专利权人 PARACEL INC.;

    申请/专利号US20000658161

  • 申请日2000-09-08

  • 分类号G06F190/00;C12Q16/80;G11C170/00;

  • 国家 US

  • 入库时间 2022-08-21 23:14:20

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