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METHOD AND SYSTEM FOR GENETIC TRAIT SEARCH BASED ON THE PHENOTYPE AND THE GENOME OF A HUMAN SUBJECT

机译:基于人类表型和基因组的遗传性状搜索方法及系统

摘要

Methods and systems of ranking a plurality of possible genetic conditions of a target subject related to assessed phenotypes of this subject comprise respective databases and search steps to provide the ranking. The genome of the target subject is analyzed, encrypted and changes are identified without providing user access to the changes. A database comprising genetic conditions linked at least in part to at least one relevant region in the genome of the subject and at least in part to at least one phenotypic characteristic. This database is searched based on the assessed phenotypes thereby providing a first ranking of possible genetic conditions, each genetic condition being related to at least one genetic change indicative of that condition. Weight scores are assigned to each of the identified changes based on predetermined criteria in order to adjust the first ranking and provide a second ranking of possible genetic conditions. A subjects database of other subjects comprises for each other subject, one or more phenotypic characteristics and the encrypted genome, wherein genetic changes in at least one relevant region in the encrypted genome are indicative of a possible genetic condition or conditions. The subjects database is searched for both phenotypic similarity and similarity of the genetic changes by respectively comparing the assessed phenotypes and the changes in the encrypted genome against the data in the subjects database. The target subject is respectively matched with one or more of the other subjects based on the phenotypic similarity therebetween and on the similarity of the genetic changes therebetween respectively. The matches are respectively ranked based on their respective degree of similarity. Depending on which set of matches was ranked first the other set will adjust the first ranking to provide a second ranking of possible genetic conditions since a given match in the second ranking is indicative of the possibility that the target subject shares the same genetic condition or conditions with the matched other subject.
机译:对与该受试者的评估表型有关的靶受试者的多种可能遗传状况进行分级的方法和系统包括相应的数据库和搜索步骤以提供分级。在不提供用户访问更改的情况下,可以分析,加密和识别目标对象的基因组。一种数据库,其包括遗传条件,所述遗传条件至少部分地与所述受试者的基因组中的至少一个相关区域相关,并且至少部分地与至少一种表型特征相关。基于所评估的表型搜索该数据库,从而提供可能遗传状况的第一等级,每个遗传状况与指示该状况的至少一个遗传变化相关。基于预定标准,将权重分数分配给每个已识别的变化,以便调整第一等级并提供可能遗传条件的第二等级。其他对象的对象数据库包括彼此对应的一个或多个表型特征和加密基因组,其中,加密基因组中至少一个相关区域的遗传变化指示一种或多种可能的遗传状况。通过分别比较评估的表型和加密基因组中的变化与受试者数据库中的数据,在受试者数据库中搜索表型相似性和遗传变化的相似性。基于靶标受试者之间的表型相似性和彼此之间的遗传变化的相似性,分别与一个或多个其他受试者匹配。根据它们各自的相似程度分别对它们进行排名。取决于第一个匹配项是哪一个,另一组将调整第一个排名以提供可能的遗传条件的第二个排名,因为第二个排名中的给定匹配项指示目标受试者具有相同或多个相同遗传条件的可能性与匹配的其他主题。

著录项

  • 公开/公告号CA2812342C

    专利类型

  • 公开/公告日2015-04-07

    原文格式PDF

  • 申请/专利权人 TRAKADIS JOHN;

    申请/专利号CA20122812342

  • 发明设计人 TRAKADIS JOHN;

    申请日2012-09-26

  • 分类号G06F19/22;G06F19/28;C12Q1/68;C04B30/02;

  • 国家 CA

  • 入库时间 2022-08-21 15:11:33

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