PROBLEM TO BE SOLVED: To provide a microarray-based method capable of detecting, with high accuracy from an analyte sample, a target nucleic acid containing a base sequence to which a nucleic acid-binding protein binds.SOLUTION: In the method, a signal is obtained from a probe not containing any sequence complementary to the base sequence to which the nucleic acid-binding protein binds for being used as a background to correct a signal obtained from a detection probe hybridizing to the target nucleic acid.
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