A method and system are provided for utilizing inter-application image overlays or virtual transparent overlays (VTOs) to communicate information between users and tools along the EDA tool chain in an EDA design flow. VTOs remain divorced from an underlying design file and are able to be manipulated by a plurality of different users in a plurality of different EDA applications or tools, all meant to operate in different stages of the design flow and perform different functions along the design path towards actual physical circuit realization and fabrication.
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