The present invention relates to a UAV control system and a method for performing UAV flight control of the same and, more specifically, to a control system, which communicates with a device attached to an unmanned aerial vehicle (UAV) such as a drone to identify the UAV and controls the UAVs flight, and a method for performing UAV flight control of the same. According to the present invention, the UAV control system not only appropriately limits the flight through a public control system when the UAV is used but also enables a user to utilize the UAV in a safe and useful manner by providing various and useful information needed for the flight of the UAV. The UVA control system comprises: an authentication module for authenticating a UAV identification device; a flight information reception module for receiving flight information from the UAV identification device; a flight monitoring module; a flight control module for transmitting a flight limit command; a UAV owner database; and a control unit for performing processes of flight control and management.
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