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Topology and Robustness in the Drosophila Segment Polarity Network

机译:果蝇区段极性网络中的拓扑和鲁棒性

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摘要

A complex hierarchy of genetic interactions converts a single-celled Drosophila melanogaster egg into a multicellular embryo with 14 segments. Previously, von Dassow et al. reported that a mathematical model of the genetic interactions that defined the polarity of segments (the segment polarity network) was robust (von Dassow et al. 2000). As quantitative information about the system was unavailable, parameters were sampled randomly. A surprisingly large fraction of these parameter sets allowed the model to maintain and elaborate on the segment polarity pattern. This robustness is due to the positive feedback of gene products on their own expression, which induces individual cells in a model segment to adopt different stable expression states (bistability) corresponding to different cell types in the segment polarity pattern. A positive feedback loop will only yield multiple stable states when the parameters that describe it satisfy a particular inequality. By testing which random parameter sets satisfy these inequalities, I show that bistability is necessary to form the segment polarity pattern and serves as a strong predictor of which parameter sets will succeed in forming the pattern. Although the original model was robust to parameter variation, it could not reproduce the observed effects of cell division on the pattern of gene expression. I present a modified version that incorporates recent experimental evidence and does successfully mimic the consequences of cell division. The behavior of this modified model can also be understood in terms of bistability in positive feedback of gene expression. I discuss how this topological property of networks provides robust pattern formation and how large changes in parameters can change the specific pattern produced by a network.
机译:复杂的遗传相互作用层次将单细胞果蝇卵转化为具有14个片段的多细胞胚胎。以前,von Dassow等。报道指出,定义区段极性(区段极性网络)的遗传相互作用的数学模型是可靠的(von Dassow等,2000)。由于无法获得有关系统的定量信息,因此对参数进行了随机抽样。这些参数集中出乎意料的很大一部分使模型得以保持并完善了线段极性模式。这种鲁棒性归因于基因产物对其自身表达的正反馈,这诱导了模型片段中的单个细胞采用与片段极性模式中不同细胞类型相对应的不同稳定表达状态(双稳态)。正反馈回路仅在描述它的参数满足特定不等式时才会产生多个稳定状态。通过测试哪些随机参数集满足这些不等式,我证明了双稳态对于形成线段极性模式是必要的,并且可以强烈预测哪些参数集将成功形成模式。尽管原始模型对参数变化具有鲁棒性,但它无法重现观察到的细胞分裂对基因表达模式的影响。我提出了一个修改后的版本,其中包含了最新的实验证据,并且确实模仿了细胞分裂的后果。还可以从基因表达的正反馈中的双稳态的角度来理解该修改模型的行为。我将讨论网络的这种拓扑特性如何提供鲁棒的模式形成,以及参数的较大变化可以改变网络产生的特定模式。

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    Ingolia Nicholas T;

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  • 年度 2004
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  • 正文语种 {"code":"en","name":"English","id":9}
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