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Understanding Spatio-Temporal Variability in the Reproduction Ratio of the Bluetongue (BTV-1) Epidemic in Southern Spain (Andalusia) in 2007 Using Epidemic Trees

机译:利用流行病树了解西班牙南部(安达卢西亚)2007年蓝舌病(BTV-1)流行病的繁殖率的时空变化

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摘要

Andalusia (Southern Spain) is considered one of the main routes of introduction of bluetongue virus (BTV) into Europe, evidenced by a devastating epidemic caused by BTV-1 in 2007. Understanding the pattern and the drivers of BTV-1 spread in Andalusia is critical for effective detection and control of future epidemics. A long-standing metric for quantifying the behaviour of infectious diseases is the case-reproduction ratio (Rt), defined as the average number of secondary cases arising from a single infected case at time t (for t>0). Here we apply a method using epidemic trees to estimate the between-herd case reproduction ratio directly from epidemic data allowing the spatial and temporal variability in transmission to be described. We then relate this variability to predictors describing the hosts, vectors and the environment to better understand why the epidemic spread more quickly in some regions or periods. The Rt value for the BTV-1 epidemic in Andalusia peaked in July at 4.6, at the start of the epidemic, then decreased to 2.2 by August, dropped below 1 by September (0.8), and by October it had decreased to 0.02. BTV spread was the consequence of both local transmission within established disease foci and BTV expansion to distant new areas (i.e. new foci), which resulted in a high variability in BTV transmission, not only among different areas, but particularly through time, which suggests that general control measures applied at broad spatial scales are unlikely to be effective. This high variability through time was probably due to the impact of temperature on BTV transmission, as evidenced by a reduction in the value of Rt by 0.0041 for every unit increase (day) in the extrinsic incubation period (EIP), which is itself directly dependent on temperature. Moreover, within the range of values at which BTV-1 transmission occurred in Andalusia (20.6°C to 29.5°C) there was a positive correlation between temperature and Rt values, although the relationship was not linear, probably as a result of the complex relationship between temperature and the different parameters affecting BTV transmission. Rt values for BTV-1 in Andalusia fell below the threshold of 1 when temperatures dropped below 21°C, a much higher threshold than that reported in other BTV outbreaks, such as the BTV-8 epidemic in Northern Europe. This divergence may be explained by differences in the adaptation to temperature of the main vectors of the BTV-1 epidemic in Andalusia (Culicoides imicola) compared those of the BTV-8 epidemic in Northern Europe (Culicoides obsoletus). Importantly, we found that BTV transmission (Rt value) increased significantly in areas with higher densities of sheep. Our analysis also established that control of BTV-1 in Andalusia was complicated by the simultaneous establishment of several distant foci at the start of the epidemic, which may have been caused by several independent introductions of infected vectors from the North of Africa. We discuss the implications of these findings for BTV surveillance and control in this region of Europe.
机译:安达卢西亚(西班牙南部)被认为是向欧洲引入蓝舌病毒(BTV)的主要途径之一,2007年由BTV-1引起的毁灭性流行证明了这一点。了解BTV-1在安达卢西亚的传播方式和驱动因素是对于有效检测和控制未来流行病至关重要。量化感染性疾病行为的长期标准是病例繁殖率(Rt),定义为在时间t(t> 0)由单个感染病例引起的继发病例的平均数量。在这里,我们应用一种使用流行病树的方法,直接从流行病数据估计畜群间病例的繁殖率,从而可以描述传播中的时空变化。然后,我们将这种可变性与描述宿主,媒介和环境的预测变量相关联,以更好地理解为什么流行病在某些地区或时期传播得更快。安达卢西亚BTV-1流行病的Rt值在疫情开始时于7月份达到最高点4.6,然后到8月降至2.2,到9月降至1以下(0.8),到10月已降至0.02。 BTV传播是既定疾病灶内局部传播和BTV向遥远的新区域(即新病灶)扩展的结果,这不仅导致不同地区之间,而且尤其是随着时间的推移,导致BTV传播的高度可变性,这表明在广泛的空间尺度上采用的一般控制措施不太可能有效。如此高的随时间变化可能是由于温度对BTV传输的影响,这一点可以通过外部潜伏期(EIP)的每单位增加(天)将Rt值降低0.0041来证明,RIP值本身是直接相关的温度。此外,在安大路西亚发生BTV-1传播的数值范围内(20.6°C至29.5°C),温度和Rt值之间呈正相关,尽管这种关系不是线性的,可能是由于复杂的结果。温度与影响BTV传输的不同参数之间的关系。当温度降至21°C以下时,安达卢西亚BTV-1的Rt值降至1的阈值以下,该阈值远高于其他BTV爆发所报告的阈值,例如北欧的BTV-8流行。这种差异可以用安达卢西亚(Culicoides imicola)的BTV-1流行病的主要媒介与北欧的BTV-8流行病的媒介对温度的适应性差异来解释。重要的是,我们发现在绵羊密度较高的地区,BTV的传播(Rt值)显着增加。我们的分析还确定,在流行病开始时同时建立几个遥远的病灶可能会使安达卢西亚BTV-1的控制复杂化,这可能是由于从非洲北部多次引入受感染的载体引起的。我们讨论了这些发现对欧洲这个地区的BTV监视和控制的意义。

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    Napp Avelli Sebastián;

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  • 年度 2016
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