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Analysis of precision in chemical oscillators: implications for circadian clocks

机译:化学振荡器精度分析:对生物钟的影响

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Biochemical reaction networks often exhibit spontaneous self-sustained oscillations. An example is the circadian oscillator that lies at the heart of daily rhythms in behavior and physiology in most organisms including humans. While the period of these oscillators evolved so that it resonates with the 24 h daily environmental cycles, the precision of the oscillator (quantified via the Q factor) is another relevant property of these cell-autonomous oscillators. Since this quantity can be measured in individual cells, it is of interest to better understand how this property behaves across mathematical models of these oscillators. Current theoretical schemes for computing the Q factors show limitations for both high-dimensional models and in the vicinity of Hopf bifurcations. Here, we derive low-noise approximations that lead to numerically stable schemes also in high-dimensional models. In addition, we generalize normal form reductions that are appropriate near Hopf bifurcations. Applying our approximations to two models of circadian clocks, we show that while the low-noise regime is faithfully recapitulated, increasing the level of noise leads to species-dependent precision. We emphasize that subcomponents of the oscillator gradually decouple from the core oscillator as noise increases, which allows us to identify the subnetworks responsible for robust rhythms.
机译:生化反应网络通常表现出自发的自持振荡。一个例子是昼夜节律振荡器,它是包括人类在内的大多数生物的行为和生理规律的核心。这些振荡器的周期不断变化,使其与每天24小时的环境周期产生谐振,而振荡器的精度(通过Q因子量化)是这些单元自治振荡器的另一个相关属性。由于可以在单个单元中测量此数量,因此有必要更好地了解此属性在这些振荡器的数学模型之间的行为。当前用于计算Q因子的理论方案对高维模型和Hopf分叉附近均显示出局限性。在这里,我们导出低噪声近似值,这也导致在高维模型中产生数值稳定的方案。此外,我们对适合于Hopf分叉的普通形式约简进行了概括。将我们的近似值应用于两个昼夜节律模型,我们可以看出,虽然忠实地重现了低噪声机制,但增加噪声水平会导致依赖于物种的精度。我们强调,随着噪声的增加,振荡器的子组件逐渐从核心振荡器中分离出来,这使我们能够确定负责稳健节奏的子网。

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