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首页> 外文期刊>Gene: An International Journal Focusing on Gene Cloning and Gene Structure and Function >Shotgun assembly of the assassin bug Brontostoma colossus mitochondrial genome (Heteroptera, Reduviidae)
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Shotgun assembly of the assassin bug Brontostoma colossus mitochondrial genome (Heteroptera, Reduviidae)

机译:刺客臭虫Brontostoma巨人线粒体基因组的H弹枪组装(Heteroptera,Reduviidae)

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摘要

The complete mitochondrial genome of the assassin bug Brontostoma colossus (Distant, 1902) (Heteroptera: Reduviidae) has been sequenced using a genome-skimming approach on an Illumina Hiseq 2000 platform. Fifty-four additional heteropteran mitogenomes, including five assassin bug species, were retrieved to allow for comparisons and phylogenetic analyses. The mitochondrial genome of B. colossus was determined to be 16,625bp long, and consists of 13 protein-coding genes (PCGs), 23 transfer-RNA genes (tRNAs), two ribosomal-RNA genes (rRNAs), and one control region. The nucleotide composition is biased toward adenine and thymine (A+T=73.4%). Overall, architecture, nucleotide composition and genome asymmetry are similar among all available assassin bug mitogenomes. All PCGs have usual start-codons (Met and Ile). Three T and two TA incomplete termination codons were identified adjacent to tRNAs, which was consistent with the punctuation model for primary transcripts processing followed by 3' polyadenylation of mature mRNA. All tRNAs exhibit the classic clover-leaf secondary structure except for tRNASer(AGN) in which the DHU arm forms a simple loop. Two notable features are present in the B. colossus mitogenome: (i) a 131bp duplicated unit including the complete tRNAArg gene, resulting in 23 potentially functional tRNAs in total, and (ii) a 857bp duplicated region comprising 277bp of the srRNA gene and 580bp of the control region. A phylogenetic analysis based on 55 true bug mitogenomes confirmed that B. colossus belongs to Reduviidae, but contradicted a widely accepted hypothesis. This highlights the limits of phylogenetic analyses based on mitochondrial data only.
机译:已在Illumina Hiseq 2000平台上使用基因组撇除法对刺客臭虫Brontostoma colossus(Distant,1902)(Heteroptera:Reduviidae)的完整线粒体基因组进行了测序。还检索了五十四种额外的异翅类有丝分裂基因组,包括五种刺客的臭虫,以进行比较和系统发育分析。经测定,巨乳芽孢杆菌的线粒体基因组长16625bp,由13个蛋白质编码基因(PCG),23个转移RNA基因(tRNA),2个核糖体RNA基因(rRNA)和一个控制区组成。核苷酸组成偏向腺嘌呤和胸腺嘧啶(A + T = 73.4%)。总体而言,所有可用的刺客虫有丝分裂基因组的结构,核苷酸组成和基因组不对称性均相似。所有PCG都有通常的起始密码(Met和Ile)。在tRNAs附近鉴定出3个T和2个TA不完全终止密码子,这与标本处理初级转录本和随后成熟mRNA的3'多腺苷酸化的标点模型一致。除tRNASer(AGN)(其中DHU臂形成一个简单环)外,所有tRNA均显示经典的三叶草叶二级结构。巨球藻有丝分裂基因组中存在两个显着特征:(i)包含完整tRNAArg基因的131bp复制单元,总共产生23个潜在功能性tRNA;(ii)857bp重复区域,包含277bp的srRNA基因和580bp控制区域。根据55个真虫有丝分裂基因组进行的系统发育分析证实,巨球芽孢杆菌属于Reduviidae,但与一个广泛接受的假设相矛盾。这突出了仅基于线粒体数据的系统发育分析的局限性。

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