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首页> 外文期刊>Journal of proteomics >An integrated transcriptomic and proteomic analysis reveals toxin arsenal of a novel Antarctic jellyfish Cyanea sp.
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An integrated transcriptomic and proteomic analysis reveals toxin arsenal of a novel Antarctic jellyfish Cyanea sp.

机译:一体化的转录组和蛋白质组学分析显示了一种新型南极水母Cyanea Sp的毒素库。

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摘要

Jellyfish is a common toxic zooplankton in ocean. We successfully captured a kind of jellyfish 200 m underwater in Antarctica, and identified it as a jellyfish Cyanea sp. through morphological examination and MT-CO1 phylogenetic analysis. A total of 40,468 unigenes were harvested through transcriptome sequencing. We also successfully annotated 12,955 (32.01%) unigenes with the NR database, 10,882 (26.89%) unigenes with the SWISSPROT database, 4951 (12.23%) unigenes with the GO database, and 4901 (12.11%) unigenes with the KEGG database. In the proteomic analysis, a total of 11,159 peptides and 2630 proteins were harvested using the constructed transcriptome as the database. A number of 771 (29.31%) and 841 (31.98%) proteins were annotated against the GO and KEGG database, respectively. Moreover, a number of 29 toxic proteins matched from the 145 toxin-related unigenes were successfully screened, including 6 metalloproteinases, 4 phospholipases, 2 serine proteases, 1 serine protease inhibitor, 7 toxin-related venom and 9 other toxins. Our study is the first to identify a polar jellyfish Cyanea sp. with transcriptomics and proteomics, and these data can further serve as a public database for the identification of potential polar jellyfish-derived lead compounds feasibly functioning in the cold environment.
机译:水母是海洋中常见的浮游动物。我们成功地在南极洲捕获了一种水下水下的水下,并将其鉴定为水母Cyanea sp。通过形态学检查和MT-CO1系统发育分析。通过转录组测序收获总共40,468个unigenes。我们还与NR数据库,10,882(26.89%)未与Wea Divelts,4901(12.11%)的Unigenes与Kegg Database有4951(12.23%)unigenes的10,882(26.89%)unigenes。在蛋白质组学分析中,使用由构造的转录组作为数据库收获总共11,159个肽和2630个蛋白质。分别为771(29.31%)和841(31.98%)蛋白质分别注释了Go和Kegg数据库。此外,成功筛选了从145个毒素相关的未造蛋白匹配的多种29种毒蛋白,包括6个金属蛋白酶,4个磷脂蛋白酶,2个磷脂酶,2个丝氨酸蛋白酶,1个丝氨酸蛋白酶抑制剂,7种毒素相关的毒液和9个其他毒素。我们的研究是第一个识别极性水母Cyanea sp的才能。随着转录组和蛋白质组学,这些数据可以进一步用作公共数据库,用于识别潜在的偏极水母衍生的铅化合物,其在冷环境中可发挥作用。

著录项

  • 来源
    《Journal of proteomics》 |2019年第2019期|共15页
  • 作者单位

    Jilin Agr Univ Coll Tradit Chinese Med Changchun 130118 Jilin Peoples R China;

    Naval Med Univ Mil Med Univ 2 Clin Med Shanghai 200433 Peoples R China;

    Naval Med Univ Mil Med Univ 2 Ctr Translat Med Dept Bioinformat Shanghai 200433 Peoples R China;

    Polar Res Inst China Shanghai 200433 Peoples R China;

    Jilin Agr Univ Coll Tradit Chinese Med Changchun 130118 Jilin Peoples R China;

    Naval Med Univ Mil Med Univ 2 Adm Off Sci Res Shanghai 200433 Peoples R China;

    Jilin Agr Univ Coll Tradit Chinese Med Changchun 130118 Jilin Peoples R China;

    Naval Med Univ Mil Med Univ 2 Fac Naval Med Shanghai 200433 Peoples R China;

  • 收录信息
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类 蛋白质;
  • 关键词

    Jellyfish; Cyanea sp.; Transcriptome; Proteome; Toxin; Antarctic;

    机译:水母;cyanea sp。;转录组;蛋白质组;毒素;南极;

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