首页> 外文期刊>Journal of Computational Chemistry: Organic, Inorganic, Physical, Biological >Anomerization Reaction of Bare and Microhydrated D-Erythrose via Explicitly Correlated Coupled Cluster Approach. Two Water Molecules Are Optimal
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Anomerization Reaction of Bare and Microhydrated D-Erythrose via Explicitly Correlated Coupled Cluster Approach. Two Water Molecules Are Optimal

机译:通过明确相关耦合聚类方法的裸露和微水D-erythose的异化反应。 两个水分子是最佳的

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We present a comprehensive benchmark computational study which has explored a complete path of the anomerization reaction of bare D-erythrose involving a pair of the low-energy alpha-and beta-furanose anomers, the former of which was observed spectroscopically (Cabezas et al., Chem. Commun. 2013, 49, 10826). We find that the ring opening of the alpha-anomer yields the most stable open-chain tautomer which step is followed by the rotational interconversion of the open-chain rotamers and final ring closing to form the beta-anomer. Our results indicate the flatness of the reaction's potential energy surface (PES) corresponding to the rotational interconversion path and its sensitivity to the computational level. By using the explicitly correlated coupled cluster CCSD(T)-F12/cc-pVTZ-F12 energies, we determine the free energy barrier for the alpha-furanose ring-opening (rate-determining) step as 170.3 kJ/mol. The question of the number of water molecules (n) needed for optimal stabilization of the erythrose anomerization reaction rate-determining transition state is addressed by a systematic exploration of the PES of the ring opening in the alpha-anomer(H2O) n and various beta-anomer-(H2O)(n) (n51-3) clusters using density functional and CCSD(T)-F12 computations. These computations suggest the lowest free energy barrier of the ring opening for doubly hydrated alpha-anomer, achieved by a mechanism that involves water-mediated multiple proton transfer coupled with the furanose C-O bond breakage. Among the methods used, the G4 performed best against the CCSD(T)F12 reference at estimating the ring-opening barrier heights for both the hydrated and bare erythrose conformers. Our results for the hydrated species are most relevant to an experimental study of the anomerization reaction of D-erythrose to be carried out in microsolvation environment. (C) 2016 Wiley Periodicals, Inc.
机译:我们展示了一项综合的基准计算研究,该研究已经探讨了涉及一对低能量α-和β-呋喃糖异构体的裸D-erythrose的异端反应的完全路径,其前者被观察到光谱(Cabezas等人。 ,化学。Comm。2013,49,10826)。我们发现α-异端器的环开口产生最稳定的开锁互变异构体,其步骤之后是开锁旋转液和最终环关闭的旋转互连,以形成β-异原。我们的结果表明反应的潜在能量表面(PE)对应于旋转互连路径的平坦度及其对计算水平的敏感性。通过使用明确相关的耦合耦合CCSD(T)-F12 / CC-PVTZ-F12能量,我们确定α-呋喃环开环(速率确定)步骤的自由能屏障为170.3kJ / mol。通过α-异端(H2O)N和各种β的环开口的PES的系统探索来解决最佳稳定性的水分子(N)所需的水分子(N)的问题。 - 使用密度官能团和CCSD(T)-F12计算的anor-(H2O)(N51-3)簇。这些计算表明,通过涉及水介导的多种质子转移与呋喃糖C-O键破裂的机制实现的机构实现了双水合α-异构体的最低自由能屏障。在使用的方法中,G4最适合抵抗CCSD(T)F12参考,用于估计用于水合和裸察糖符合特的环开屏障高度。我们的水合物质的结果与D-红细胞的异化反应的实验研究最相关的是在微溶剂化环境中进行的。 (c)2016 Wiley期刊,Inc。

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