首页> 外文期刊>Journal of Computational Chemistry: Organic, Inorganic, Physical, Biological >Dcdftbmd: Divide-and-Conquer Density Functional Tight-Binding Program for Huge-System Quantum Mechanical Molecular Dynamics Simulations
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Dcdftbmd: Divide-and-Conquer Density Functional Tight-Binding Program for Huge-System Quantum Mechanical Molecular Dynamics Simulations

机译:DCDFTBMD:用于巨大系统量子机械分子动力学模拟的划分和征服密度功能紧密绑定程序

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摘要

Dcdftbmd is a Fortran 90/95 program that enables efficient quantum mechanical molecular dynamics (MD) simulations using divide-and-conquer density functional tight-binding (DC-DFTB) method. Based on the remarkable performance of previous massively parallel DC-DFTB energy and gradient calculations for huge systems, the code has been specialized to MD simulations. Recent implementations and modifications including DFTB extensions, improved computational speed in the DC-DFTB computational steps, algorithms for efficient initial guess charge prediction, and free energy calculations via metadynamics technique have enhanced the capability to obtain atomistic insights in novel applications to nanomaterials and biomolecules. The energy, structure, and other molecular properties are also accessible through the single-point calculation, geometry optimization, and vibrational frequency analysis. The available functionalities are outlined together with efficiency tests and simulation examples. (c) 2019 Wiley Periodicals, Inc.
机译:DCDFTBMD是一种FORTRAN 90/95程序,可以使用分频和征服密度功能紧密(DC-DFTB)方法实现高型量子机械分子动力学(MD)模拟。基于以前的大型平行DC-DFTB能量和巨大系统梯度计算的显着性能,该代码专门用于MD模拟。最近的实施方式和修改包括DFTB扩展,改善DC-DFTB计算步骤中的计算速度,有效的初始猜测电荷预测的算法,以及通过METADAdnamics技术的自由能计算具有增强了对纳米材料和生物分子的新应用中的原子洞察力的能力。通过单点计算,几何优化和振动频率分析也可以访问能量,结构和其他分子特性。可用功能与效率测试和仿真示例一起概述。 (c)2019 Wiley期刊,Inc。

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