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Quantum Chemical Benchmark Studies of the Electronic Properties of the Green Fluorescent Protein Chromophore: 2. Cis- Trans Isomerization in Water

机译:量子化学基准研究绿色荧光蛋白发色团的电子性质:2.在水中顺式异构化

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We present quantum chemical calculations of the properties of the anionic form of the green fluorescent protein (GFP) chromophore that can be directly compared to the results of experimental measurements: the cis-trans isomerization energy profile in water. Calculations of the cis-trans chromophore isomerization pathway in the gas phase and in water reveal a problematic behavior of density functional theory and scaled opposite-spin-MP2 due to the multiconfigurational character of the wave function at twisted geometries. The solvent effects treated with the continuum solvation models, as well as with the water cluster model, are found to be important and can reduce the activation energy by more than 10 kcal/mol. Strong solvent effects are explained by the change in charge localization patterns along the isomerization coordinate. At the equilibrium, the negative charge is almost equally delocalized between the phenyl and imidazolin rings due to the interaction of two resonance structures, whereas at the transition state the charge is localized on the imidazolin moiety. Our best estimate of the barrier obtained in cluster calculations employing the effective fragment potential-based quantum mechanics/molecular mechanics method with the complete active space self-consistent field description of the chromophore augmented by perturbation theory correction and the TIP3P water model is 14.8 kcal/mol, which is in excellent agreement with the experimental value of 15.4 kcal/mol. This result helps to resolve previously reported disagreements between experimental measurements and theoretical estimates.
机译:我们呈现了绿色荧光蛋白(GFP)发色团的阴离子形式的性质的量子化学计算,其可以直接与实验测量结果进行比较:水中的CIS-Trans异构化能量曲线。气相和水中Cis-Trans发色团异构化途径的计算揭示了密度函数理论的有问题行为,并且由于扭曲几何形状的波函数的多功能性特征,缩放了对立 - 旋转MP2。发现用连续源溶剂化模型以及水簇模型处理的溶剂效应是重要的,并且可以将活化能量降低超过10kcal / mol。通过沿着异构化坐标的电荷定位模式的变化来解释强溶剂效应。在平衡下,由于两个共振结构的相互作用,负电荷几乎在苯基和咪唑啉环之间截然化,而在过渡状态下,电荷局部化在咪唑啉部分上。我们对采用有效碎片电位的量子力学/分子力学方法的集群计算中获得的屏障的最佳估计是通过扰动理论校正的完整主动空间自我一致的现场描述,Tip3p水模型为14.8千卡/ Mol,与实验值为15.4 kcal / mol的实验值非常一致。该结果有助于解决先前报告的实验测量与理论估计之间的分歧。

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    Department of Chemistry University of Southern California Los Angeles California 90089 Department of Chemistry M. V. Lomonosov Moscow State University Moscow 119991 Russia and Institute of Biochemical Physics Russian Academy of Sciences Moscow 1;

    Department of Chemistry University of Southern California Los Angeles California 90089 Department of Chemistry M. V. Lomonosov Moscow State University Moscow 119991 Russia and Institute of Biochemical Physics Russian Academy of Sciences Moscow 11;

    Department of Chemistry University of Southern California Los Angeles California 90089 Department of Chemistry M. V. Lomonosov Moscow State University Moscow 119991 Russia and Institute of Biochemical Physics Russian Academy of Sciences Moscow 11;

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  • 中图分类 化学键的量子力学理论;
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