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Machine Learning in Computational Chemistry: An Evaluation of Method Performance for Nudged Elastic Band Calculations

机译:计算化学中的机器学习:对闪光弹性带计算方法性能的评价

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摘要

The localization of transition states and the calculation of reaction pathways are routine tasks of computational chemists but often very CPU-intense problems, in particular for large systems. The standard algorithm for this purpose is the nudged elastic band method, but it has become obvious that an “intelligent” selection of points to be evaluated on the potential energy surface can improve its convergence significantly. This article summarizes, compares, and extends known strategies that have been heavily inspired by the machine learning developments of recent years. It presents advantages and disadvantages and provides an unbiased comparison of neural network based approaches, Gaussian process regression in Cartesian coordinates, and Gaussian approximation potentials. We test their performance on two example reactions, the ethane rotation and the activation of carbon dioxide on a metal catalyst, and provide a clear ranking in terms of usability for future implementations.
机译:过渡状态的定位和反应途径的计算是计算化学家的常规任务,但通常非常CPU - 强烈的问题,特别是对于大型系统。 标准算法为此目的是闪烁的弹性带法,但很明显,“智能”选择要在潜在能量表面上进行评估的点可以显着提高其收敛性。 本文总结了,比较,并扩展了由近年来的机器学习发展的严重启发的已知策略。 它呈现了优缺点,并提供了基于神经网络的方法,高斯过程回归在笛卡尔坐标和高斯近似电位的不偏不倚的比较。 我们在金属催化剂上对两个示例反应,乙烷旋转和二氧化碳的激活来测试它们的性能,并在可用性方面提供清晰的排名。

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