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首页> 外文期刊>Limnologica >Development of microsatellite loci for two Agabus diving beetle species from the pooled DNA and testing their utility in mountain lake populations
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Development of microsatellite loci for two Agabus diving beetle species from the pooled DNA and testing their utility in mountain lake populations

机译:两个 agabus的微卫星基因座的发展

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AbstractDiving beetles (Dytiscidae) are the most speciose water beetle group, occurring on all continents except Antarctica. They inhabit various lotic and lentic habitats and play an important role in ecosystem functioning. In this study, we developed functional polymorphic microsatellites for two widely distributed species from one of the most diversified dytiscid genusAgabus:Agabus bipustulatus(Linnaeus, 1767) andAgabuscf.guttatusfrom theAgabus guttatusgroup sensu Foster and Bilton (1997). For microsatellites development, pooled DNA and NGS pyrosequencing were used. Microsatellites are still very useful genetic markers for studying recent population changes, but for dytiscids, highly diversified and ecologically important group of freshwater invertebrates, only 8 microsatellite loci are available for one North American species. To test utility of the developed markers, we used several populations of alpine lakes, situated in the Tatra Mountains (Western Carpathians). From the 60 tested markers, 13 loci forAgabus bipustulatusand 8 loci forA.cf. guttatusshowed polymorphism. The number of alleles per locus varied from 2 to 10 and no significant linkage disequilibrium was observed. Observed/expected heterozygosity varied from 0/0.077 to 1/0.834 within populations ofA.cf.guttatusand from 0/0.056 to 1/0.837 within populations ofA. bipustulatus. The significant deviation from HWE was probably caused by presence of null alleles or undetecte
机译:<![cdata [ 抽象 潜水甲虫(Dytiscidae)是最常规的水甲虫组,除南极洲除外。他们居住在各种巨大的巨大栖息地,并在生态系统运作中发挥重要作用。在这项研究中,我们从最多样化的Dytiscid Genus agabus agabus bipustulatus (Linnaeus ,1767)和 agabus cf. guttatus agabus guttatus 集团sensu foster和bilton (1997)。对于微卫星的开发,使用汇集的DNA和NGS焦磷酸盐。微卫星仍然是非常有用的遗传标记,用于研究最近的人口变化,但对于Dytcisids,高度多样化和生态的重要淡水中的淡水无脊椎动物,只有8个微卫星基因座可用于北美北美物种。为了测试发达标志物的效用,我们在塔特拉山脉(西喀尔巴阡山脉)使用了几个高山湖泊人口。从60个测试标记,13个LOCI for agabus bipustulatus a的8个loci。 cf 。 guttatus 显示多态性。每个基因座的等位基因数量从2到10变化,并且没有观察到显着的连接不平衡。观察到的/预期杂合子在 a的群体中的0 / 0.077至1 / 0.834不同。 cf. guttatus 和0 / 0.056到1 / 0.837在 a的群体中。 bipustulatus 。来自HWE的显着偏差可能是由零等位基因的存在或未衰减引起的

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