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Deep learning enables cross-modality super-resolution in fluorescence microscopy

机译:深度学习使荧光显微镜中的跨型号超分辨率

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摘要

We present deep-learning-enabled super-resolution across different fluorescence microscopy modalities. This data-driven approach does not require numerical modeling of the imaging process or the estimation of a point-spread-function, and is based on training a generative adversarial network (GAN) to transform diffraction-limited input images into super-resolved ones. Using this framework, we improve the resolution of wide-field images acquired with low-numerical-aperture objectives, matching the resolution that is acquired using high-numerical-aperture objectives. We also demonstrate cross-modality super-resolution, transforming confocal microscopy images to match the resolution acquired with a stimulated emission depletion (STED) microscope. We further demonstrate that total internal reflection fluorescence (TIRF) microscopy images of subcellular structures within cells and tissues can be transformed to match the results obtained with a TIRF-based structured illumination microscope. The deep network rapidly outputs these super-resolved images, without any iterations or parameter search, and could serve to democratize super-resolution imaging.
机译:我们呈现出跨不同荧光显微镜模型的深学习的超分辨率。这种数据驱动方法不需要对成像过程的数值建模或点扩散功能的估计,并且基于训练生成的对抗性网络(GAN)来将衍射限制的输入图像转换为超分辨的输入图像。使用此框架,我们改善了利用低数字 - 光圈目标获取的宽场图像的分辨率,匹配使用高值孔径目标获取的分辨率。我们还展示了跨型号超分辨率,转化共聚焦显微镜图像以匹配用刺激的发射耗尽(STED)显微镜获得的分辨率。我们进一步证明,可以转化细胞和组织内亚细胞结构的全内反射荧光(TiRF)显微镜图像以匹配与基于TiRF的结构化照相显微镜获得的结果。深网络迅速输出这些超分辨率的图像,而无需任何迭代或参数搜索,并且可以用于民主化超分辨率成像。

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  • 来源
    《Nature methods》 |2019年第1期|共11页
  • 作者单位

    Univ Calif Los Angeles Elect &

    Comp Engn Dept Los Angeles CA 90095 USA;

    Univ Calif Los Angeles Elect &

    Comp Engn Dept Los Angeles CA 90095 USA;

    Univ Calif Los Angeles Elect &

    Comp Engn Dept Los Angeles CA 90095 USA;

    Univ Calif Los Angeles Elect &

    Comp Engn Dept Los Angeles CA 90095 USA;

    Univ Calif Los Angeles Dept Comp Sci Los Angeles CA 90024 USA;

    Univ Calif Los Angeles Elect &

    Comp Engn Dept Los Angeles CA 90095 USA;

    Univ Calif Los Angeles Calif NanoSyst Inst Los Angeles CA 90095 USA;

    Ohio State Univ Dept Phys 174 W 18th Ave Columbus OH 43210 USA;

    Univ Calif Los Angeles Elect &

    Comp Engn Dept Los Angeles CA 90095 USA;

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  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类 生物科学;
  • 关键词

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