A mirage of cryptic species: Genomics uncover striking mitonuclear discordance in the butterfly        <i >Thymelicus sylvestrisThymelicus sylvestris

Hinojosa Joan C.; Koubínová Darina; Szenteczki Mark A.; Pitteloud Camille; Dinc? Vlad; Alvarez Nadir; Vila Roger

摘要

Abstract > Mitochondrial DNA (mtDNA) sequencing has led to an unprecedented rise in the identification of cryptic species. However, it is widely acknowledged that nuclear DNA (nuDNA) sequence data are also necessary to properly define species boundaries. Next generation sequencing techniques provide a wealth of nuclear genomic data, which can be used to ascertain both the evolutionary history and taxonomic status of putative cryptic species. Here, we focus on the intriguing case of the butterfly Thymelicus sylvestris (Lepidoptera: Hesperiidae). We identified six deeply diverged mitochondrial lineages; three distributed all across Europe and found in sympatry, suggesting a potential case of cryptic species. We then sequenced these six lineages using double‐digest restriction‐site associated DNA sequencing (ddRADseq). Nuclear genomic loci contradicted mtDNA patterns and genotypes generally clustered according to geography, i.e., a pattern expected under the assumption of postglacial recolonization from different refugia. Further analyses indicated that this strong mtDNA/nuDNA discrepancy cannot be explained by incomplete lineage sorting, sex‐biased asymmetries, NUMTs, natural selection, introgression or Wolbachia ‐mediated genetic sweeps. We suggest that this mitonuclear discordance was caused by long periods of geographic isolation followed by range expansions, homogenizing the nuclear but not the mitochondrial genome. These results highlight T.?sylvestris as a potential case of multiple despeciation and/or lineage fusion events. We finally argue, since mtDNA and nuDNA do not necessarily follow the same mechanisms of evolution, their respective evolutionary history reflects complementary aspects of past demographic and biogeographic events. </abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> <div class="translation abstracttxt"> <span class="zhankaihshouqi fivelineshidden" id="abstract"> <span>机译：</span><Abstract Type =“Main”XML：ID =“MEC15153-ABS-AB-0001”XML：Lang =“en”> <标题类型=“main”>摘要</标题> >线粒体DNA（MTDNA）测序LED识别隐秘物种的前所未有的上升。然而，众所周知，核DNA（NUDNA）序列数据也需要适当地定义物种边界。下一代测序技术提供了丰富的核基因组数据，可用于确定推定隐秘物种的进化历史和分类状态。在这里，我们专注于蝴蝶的有趣案例胸腺Sylvestris（Lepidoptera：Hesperiidae）。我们确定了六个深深分叉的线粒体谱系;三次分布在欧洲各地，在Sympatry中发现，表明隐秘物种的潜在案例。然后，我们使用双消化限制性位点相关的DNA测序（DDRADSeq）测序这六个谱系。核基因组基因座矛盾的MTDNA模式和基因型通常根据地理，即，在不同避难所的假设下预期的模式。进一步的分析表明，这种强大的MTDNA / NUDNA差异不能通过不完全分类，性偏见的不对称，NUMT，自然选择，渗入或 Wolbachia </ I>介导的遗传扫描。我们建议，这种语核核心不景气是由长时间的地理隔离引起的，然后是范围扩展，均化核化但不是线粒体基因组。这些结果突出显示 t.? ylvestris </ i>作为多算法和/或谱系融合事件的潜在情况。我们终于争辩说，由于MTDNA和NUDNA不一定遵循相同的进化机制，因此各自的进化历史反映了过去人口统计和生物地理事件的互补方面。 </ p> </ abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> </div> <div class="record"> <h2 class="all_title" id="enpatent33" >著录项</h2> <ul> <li> <span class="lefttit">来源</span> <div style="width: 86%;vertical-align: text-top;display: inline-block;"> <a href='/journal-foreign-25253/'>《Molecular ecology》</a> <b style="margin: 0 2px;">|</b><span>2019年第17期</span><b style="margin: 0 2px;">|</b><span>共12页</span> </div> </li> <li> <div class="author"> <span class="lefttit">作者</span> <p id="fAuthorthree" class="threelineshidden zhankaihshouqi"> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Hinojosa Joan C.&option=202" target="_blank" rel="nofollow">Hinojosa Joan C.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Koubínová Darina&option=202" target="_blank" rel="nofollow">Koubínová Darina;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Szenteczki Mark A.&option=202" target="_blank" rel="nofollow">Szenteczki Mark A.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Pitteloud Camille&option=202" target="_blank" rel="nofollow">Pitteloud Camille;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Dinc? Vlad&option=202" target="_blank" rel="nofollow">Dinc? Vlad;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Alvarez Nadir&option=202" target="_blank" rel="nofollow">Alvarez Nadir;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Vila Roger&option=202" target="_blank" rel="nofollow">Vila Roger;</a> </p> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zkzz" style="display: none;">展开▼</span> </div> </li> <li> <div style="display: flex;"> <span class="lefttit">作者单位</span> <div style="position: relative;margin-left: 3px;max-width: 639px;"> <div class="threelineshidden zhankaihshouqi" id="fOrgthree"> <p>Institut de Biologia Evolutiva (CSIC‐UPF)Barcelona Spain;</p> <p>Unit of Research and CollectionMuseum of Natural HistoryGeneva Switzerland;</p> <p>Laboratory of Functional Ecology Institute of BiologyUniversity of NeuchatelNeuchatel Switzerland;</p> <p>Department of Environmental Systems Sciences Institute of Terrestrial EcosystemsETHZZürich Switzerland;</p> <p>Department of Ecology and GeneticsUniversity of OuluOulu Finland;</p> <p>Unit of Research and CollectionMuseum of Natural HistoryGeneva Switzerland;</p> <p>Institut de Biologia Evolutiva (CSIC‐UPF)Barcelona Spain;</p> </div> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zhdw" style="display: none;">展开▼</span> </div> </div> </li> <li > <span class="lefttit">收录信息</span> <span style="width: 86%;vertical-align: text-top;display: inline-block;"></span> </li> <li> <span class="lefttit">原文格式</span> <span>PDF</span> </li> <li> <span class="lefttit">正文语种</span> <span>eng</span> </li> <li> <span class="lefttit">中图分类</span> <span><a href="https://www.zhangqiaokeyan.com/clc/1285.html" title="生态学（生物生态学）">生态学（生物生态学）;</a></span> </li> <li class="antistop"> <span class="lefttit">关键词</span> <p style="width: 86%;vertical-align: text-top;"> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=despeciation&option=203" rel="nofollow">despeciation;</a> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=genomics&option=203" rel="nofollow">genomics;</a> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Lepidoptera&option=203" rel="nofollow">Lepidoptera;</a> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=lineage fusion&option=203" rel="nofollow">lineage fusion;</a> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=mitochondrial DNA&option=203" rel="nofollow">mitochondrial DNA;</a> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=RAD sequencing&option=203" rel="nofollow">RAD sequencing;</a> </p> <div class="translation"> 机译：算法;基因组学;鳞翅目;谱系融合;线粒体DNA;RAT测序; </div> </li> </ul> </div> </div> <div class="literature cardcommon" id="literaturereference" style="display:none"> <div class="similarity "> <h3 class="all_title" id="enpatent111">引文网络</h3> <div class="referencetab clearfix"> <ul id="referencedaohang"> <li dataid="referenceul">参考文献</li> <li dataid="citationul">引证文献</li> <li dataid="commonreferenceul">共引文献</li> <li dataid="commoncitationul">同被引文献</li> <li dataid="tworeferenceul">二级参考文献</li> <li dataid="twocitationul">二级引证文献</li> </ul> </div> <div class="reference_details" id="referenceList"> <ul id="referenceul"></ul> <ul id="citationul"></ul> <ul id="commonreferenceul"></ul> <ul id="commoncitationul"></ul> <ul id="tworeferenceul"></ul> <ul id="twocitationul"></ul> </div> </div> </div> <div class="literature cardcommon"> <div class="similarity "> <h3 class="all_title" id="enpatent66">相似文献</h3> <div class="similaritytab clearfix"> <ul> <li class="active" >外文文献</li> </ul> </div> <div class="similarity_details"> <ul > <li> <div> <b>1. </b><a class="enjiyixqcontent" href="/journal-foreign-detail/0704023741468.html">A mirage of cryptic species: Genomics uncover striking mitonuclear discordance in the butterfly <i >Thymelicus sylvestrisThymelicus sylvestris</a> 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A mirage of cryptic species: Genomics uncover striking mitonuclear discordance in the butterfly Thymelicus sylvestrisThymelicus sylvestris

摘要