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首页> 外文期刊>African Zoology >Inadequate taxonomy and highly divergent COI haplotypes in laboratory and field populations of earthworms used in ecotoxicology. A case study
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Inadequate taxonomy and highly divergent COI haplotypes in laboratory and field populations of earthworms used in ecotoxicology. A case study

机译:在生态毒理学中使用的实验室和蚯蚓的实验室和野外群中的分类学和高度分泌的COI单倍型。 案例研究

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摘要

DNA barcoding was used to investigate the phylogenetic delimitations of Eisenia sp. populations used in ecotoxicological research in South Africa. A total of three focal groups (used in published works) and two non-focal groups were assessed. These focal groups, including two laboratory cultures and one field population, have been referred to as Eisenia fetida in the literature. A previous molecular study had already helped to establish that one of the two laboratory groups was a population of E. fetida's sister species E. andrei. In the present contribution, analyses of the COI gene revealed that the taxonomy of the remaining laboratory and field populations had also been incorrectly assigned since all the generated sequences grouped unequivocally with published sequences of E. andrei. Very high sequence divergence (>25% K2P) found within E. andrei could signal the occurrence of hitherto undescribed cryptic species. These findings are discussed with an emphasis on the possible consequences of using poorly identified earthworms or specimens with high molecular divergence in ecotoxicological bioassays. It is not clear whether unbeknownst to the researchers, the use of cryptic species in bioassays could jeopardise the quality of ecotmdcological investigations. Early evidence suggests that cryptic oligochaete species may respond differently to metal toxicity. The need for comparative ecotoxicological studies between E. andrei and E. fetida is also evidenced, especially in the light of recent numerous reports of cryptic oligochaete species. Ecotoxicologists are consequently encouraged, whenever possible, to make use of available genomic technologies to screen their laboratory stocks and available field populations for any molecular distinctiveness.
机译:DNA条形码用于研究艾西哥菌的系统发育界。南非生态毒理学研究中使用的群体。评估共有三个焦点群(用于公布的作品)和两个非统一组织。这些焦点群体包括两个实验室文化和一个野外人口,被称为文献中的艾西比达。先前的分子研究已经帮助建立了两种实验室组中的一个是E.Fetida的姐妹种群E. Andrei的群体。在目前的贡献中,COI基因的分析表明,由于所有产生的序列与E. Andrei的已发表的序列统一进行了统一进行的所有产生的序列,所以剩余实验室和野外群的分类也被错误地分配了不正确的分配。在E. Andrei中发现的非常高的序列分歧(> 25%K2P)可以发出迄今未思索隐秘物种的发生。讨论这些发现,重点是使用在生态毒理学生物测定中使用较高的蚯蚓或具有高分子分歧的蚯蚓或标本的可能后果。目前尚不清楚对研究人员不知道的,在生物测定中使用隐秘物种可能会危及生态学调查的质量。早期证据表明,隐秘的寡替莫纳特物种可能与金属毒性不同。在E. Andrei和E.Fetida之间的比较生态毒理学研究也会有所证明,特别是根据近期众多众多神秘的寡酒卓曲型物种的报道。因此,在可能的情况下,将鼓励生态毒理学家以利用可用的基因组技术来筛选他们的实验室库存和可用的野外群体,以便任何分子截然不同。

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