Configurational-Bias Monte Carlo Back-Mapping Algorithm for Efficient and Rapid Conversion of Coarse-Grained Water Structures into Atomistic Models

摘要

Coarse-grained molecular dynamics (MD) simulations represent a powerful approach to simulate longer time scale and larger length scale phenomena than those accessible to all-atom models. The gain in efficiency, however, comes at the cost of atomistic details. The reverse transformation, also known as back mapping, of coarse-grained beads into their atomistic constituents represents a major challenge. Most existing approaches are limited to specific molecules or specific force fields and often rely on running a long-time atomistic MD of the back-mapped configuration to arrive at an optimal solution. Such approaches are problematic when dealing with systems with high diffusion barriers. Here, we introduce a new extension of the configurational-bias Monte Carlo (CBMC) algorithm, which we term the crystalline configurational -bias Monte Carlo (C-CBMC) algorithm, which allows rapid and efficient conversion of a coarse-grained model back into its atomistic representation. Although the method is generic, we use a coarse-grained water model as a representative example and demonstrate the back mapping or reverse transformation for model systems ranging from the ice liquid water interface to amorphous and crystalline ice configurations. A series of simulations using the TIP4P/Ice model are performed to compare the new CBMC method to several other standard Monte Carlo and molecular dynamics-based back-mapping techniques. In all of the cases, the C-CBMC algorithm is able to find optimal hydrogen-bonded configuration many thousand evaluations/steps sooner than the other methods compared within this paper. For crystalline ice structures, such as a hexagonal, cubic, and cubic-hexagonal stacking disorder structures, the C-CBMC was able to find structures that were between 0.05 and 0.1 eV/water molecule lower in energy than the ground-state energies predicted by the other methods. Detailed analysis of the atomistic structures shows a significantly better global hydrogen positioning when contrasted with the existing simpler back mapping methods. The errors in the radial distribution functions (RDFs) of back-mapped configuration relative to reference configuration for the C-CBMC, MD, and MC were found to be 6.9, 8.7, and 12.9, respectively, for the hexagonal system. For the cubic system, the relative errors of the RDFs for the C-CBMC, MD, and MC were found to be 18.2, 34.6, and 39.0, respectively. Our results demonstrate the efficiency and efficacy of our new back-mapping approach, especially for crystalline systems where simple force-field-based relaxations have a tendency to get trapped in local minima.