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Atomic orbital-based SOS-MP2 with tensor hypercontraction. II. Local tensor hypercontraction

机译:基于原子轨道的SOS-MP2,具有张量超应电。 II。 局部张超速度

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In the first paper of the series [Paper I, C. Song and T. J. Martinez, J. Chem. Phys. 144, 174111 (2016)], we showed how tensor-hypercontracted (THC) SOS-MP2 could be accelerated by exploiting sparsity in the atomic orbitals and using graphical processing units (GPUs). This reduced the formal scaling of the SOS-MP2 energy calculation to cubic with respect to system size. The computational bottleneck then becomes the THC metric matrix inversion, which scales cubically with a large prefactor. In this work, the local THC approximation is proposed to reduce the computational cost of inverting the THC metric matrix to linear scaling with respect to molecular size. By doing so, we have removed the primary bottleneck to THC-SOS-MP2 calculations on large molecules with O(1000) atoms. The errors introduced by the local THC approximation are less than 0.6 kcal/mol for molecules with up to 200 atoms and 3300 basis functions. Together with the graphical processing unit techniques and locality-exploiting approaches introduced in previous work, the scaled opposite spin MP2 (SOS-MP2) calculations exhibit O(N-2.5) scaling in practice up to 10 000 basis functions. The new algorithms make it feasible to carry out SOS-MP2 calculations on small proteins like ubiquitin (1231 atoms/10 294 atomic basis functions) on a single node in less than a day. Published by AIP Publishing.
机译:在该系列的第一个论文中[纸张I,C.歌曲和T.J.Martinez,J.Chem。物理。 144,174111(2016)]我们展示了如何通过利用原子轨道中的稀疏性和使用图形处理单元(GPU)来加速Tensor超级(THC)SOS-MP2。这将SOS-MP2能量计算的正式缩放与系统大小相对于立方体。然后,计算瓶颈成为THC度量矩阵反转,其与大型主体均别达到尺度。在这项工作中,提出了局部THC近似,以降低将THC度量矩阵反转到相对于分子大小的线性缩放的计算成本。通过这样做,我们已经将主要瓶颈移除到具有O(1000)原子的大分子上的THC-SOS-MP2计算。由局部THC近似引入的误差小于0.6kcal / mol,用于多达200个原子和3300个基数的分子。与以前的工作中引入的图形处理单元技术和地区利用方法一起,缩放相对的旋转MP2(SOS-MP2)计算展示了o(n-2.5)在实践中缩放,高达10 000个基本功能。新算法使得在不到一天的单个节点上对泛素(1231原子/ 10 294原子基函数)如泛素(1231原子/ 10 294原子基函数)进行SOS-MP2计算。通过AIP发布发布。

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