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Molecular phylogenetic analysis of Acridoidea (Orthoptera: Caelifera) based on mitochondrial cytochrome oxidase subunit sequences

机译:基于线粒体细胞色素氧化酶亚基序列的Ac形纲(直翅目:Caelifera)的分子系统发育分析

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Phylogenetic relationships of Acridoidea were examined using mitochondrial cytochrome oxidase subunit sequences (COI, COII and COIII, total 2970bp). Fourteen grasshopper species of thirteen genera from seven families were sequenced to obtain mitochondrial genes data, along with twenty-two grasshopper species were obtained from the GenBank nucleotide database. The purpose of this study is to infer the phylogenetic relationships among families within Acridoidea and testing the monophyly of Acridoidea and each families of it. Phylogenic trees were reconstructed using Maximum Likelihood (ML) and Maximum Parsimony (MP) methods with Tettigonioidea and Gryllotalpoidea as outgroups. The putative initiation codon for COI is CCG in thirteen studied species and ATC in Bryodema luctuosum luctuosum. The 2970 bp concatenated sequences included 1431 conserved sites, 1539 variable sites, and 1216 parsimony-informative sites, the nucleotide compositions were significantly biased toward A and T (68.8%). The resulted phylogenetic trees supported the monophyly of Acridoidea, but did not entirely agree with the traditional morphology-based taxonomic system of grasshoppers within Acridoidea. The monophyly of three families of Acrididae, Catantopidae and Arcypteridae were not supported; Gomphoceridae and Arcypteridae were recovered together as a monophyletic group because of closer phylogenetic relationships; Pyrgomorphidae and Chrotogonidae have the same closer relationships; Pneumoridae, Pyrgomorphidae and Chrotogonidae were the most basal groups; while the taxonomic status of Pamphagidae, which was revealed as a monophyletic group, was not clear in this analysis. Moreover, the results indicate that a phylogeny inferred from the combination of several genes is more reliable than that from only a single gene sequence, and the third codon positions of protein coding genes can improve the topology and node supports of the phylogenetic trees.
机译:使用线粒体细胞色素氧化酶亚基序列(COI,COII和COIII,共2970bp)检查了蛛形纲的亲缘关系。对来自七个科的十三属的十四个蚱hopper物种进行测序以获得线粒体基因数据,并从GenBank核苷酸数据库中获取二十二个蚱species物种。这项研究的目的是推断Ac形纲内各科之间的亲缘关系,并测试Ac形纲及其每个科的单性。使用最大似然(ML)和最大简约(MP)方法重建系统发生树,其中将花粉蝶和灰蝶亚目作为分组。推定的COI起始密码子是13种被研究物种的CCG和Bryodema luctuosum luctuosum中的ATC。 2970 bp的串联序列包括1431个保守位点,1539个可变位点和1216个简约信息位点,核苷酸组成显着偏向A和T(68.8%)。所得的系统发育树支持Ac形纲的单生,但并不完全符合within形纲内传统基于形态学的蝗虫分类系统。不支持Ac科,Cat科和弓形科的三个科的单亲;由于紧密的亲缘关系,线虫科和弓形虫科被作为一个单系统种群一起恢复。拟蝇科和色母科之间有着更密切的联系。肺虫科,吡虫科和虎科是最基础的群体。这项分析没有明确揭示Pamphagidae的分类学地位,它是一个单基因组。而且,结果表明,从多个基因的组合推断出的系统发育比仅从单个基因序列推断的系统发育更可靠,并且蛋白质编码基因的第三个密码子位置可以改善系统发育树的拓扑结构和节点支持。

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