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In silico drug discovery approaches on grid computing infrastructures.

机译:网格计算基础架构上的计算机电子药物发现方法。

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The first step in finding a "drug" is screening chemical compound databases against a protein target. In silico approaches like virtual screening by molecular docking are well established in modern drug discovery. As molecular databases of compounds and target structures are becoming larger and more and more computational screening approaches are available, there is an increased need in compute power and more complex workflows. In this regard, computational Grids are predestined and offer seamless compute and storage capacity. In recent projects related to pharmaceutical research, the high computational and data storage demands of large-scale in silico drug discovery approaches have been addressed by using Grid computing infrastructures, in both; pharmaceutical industry as well as academic research. Grid infrastructures are part of the so-called eScience paradigm, where a digital infrastructure supports collaborative processes by providing relevant resources and tools for data- and compute-intensive applications. Substantial computing resources, large data collections and services for data analysis are shared on the Grid infrastructure and can be mobilized on demand. This review gives an overview on the use of Grid computing for in silico drug discovery and tries to provide a vision of future development of more complex and integrated workflows on Grids, spanning from target identification and target validation via protein-structure and ligand dependent screenings to advanced mining of large scale in silico experiments.
机译:寻找“药物”的第一步是针对蛋白质靶标筛选化合物数据库。在计算机模拟中,诸如通过分子对接进行虚拟筛选的方法已在现代药物发现中广为接受。随着化合物和目标结构的分子数据库变得越来越大,并且越来越多的计算筛选方法可用,对计算能力和更复杂的工作流程的需求日益增长。在这方面,计算网格是注定要提供无缝计算和存储容量的。在最近的与药物研究有关的项目中,两种方法都通过使用网格计算基础架构来解决大规模计算机用药物发现方法对计算和数据存储的高要求。制药业以及学术研究。网格基础架构是所谓的eScience范式的一部分,其中数字基础架构通过为数据和计算密集型应用程序提供相关资源和工具来支持协作过程。大量的计算资源,大型数据集和用于数据分析的服务在Grid基础架构上共享,可以按需调动。这篇综述概述了网格计算在计算机药物开发中的应用,并试图为网格上更复杂和集成的工作流程的未来发展提供一个愿景,涵盖从通过蛋白质结构和配体依赖性筛选进行的目标识别和目标验证到先进的计算机模拟大规模采矿。

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