首页> 外文期刊>The journal of physical chemistry, A. Molecules, spectroscopy, kinetics, environment, & general theory >Monte Carlo temperature basin paving with effective fragment potential: An efficient and fast method for finding low-energy structures of water clusters (H_2O)_(20) and (H_2O)_(25)
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Monte Carlo temperature basin paving with effective fragment potential: An efficient and fast method for finding low-energy structures of water clusters (H_2O)_(20) and (H_2O)_(25)

机译:具有有效碎片潜能的蒙特卡洛温度盆地铺装:寻找水团(H_2O)_(20)和(H_2O)_(25)的低能结构的一种高效快捷的方法

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摘要

Determining low-energy structures of large water clusters is a challenge for any optimization algorithm. In this work, we have developed a new Monte Carlo (MC)-based method, temperature basin paving (TBP), which is related to the well-known basin hopping method. In the TBP method, the Boltzmann weight factor used in MC methods is dynamically modified based on the history of the simulation. The states that are visited more are given a lower probability by increasing their temperatures and vice versa. This allows faster escapes from the states frequently visited in the simulation. We have used the TBP method to find a large number of low-energy minima of water clusters of size 20 and 25. We have found structures energetically same to the global minimum structures known for these two clusters. We have compared the efficiency of this method to the basin-hopping method and found that it can locate the minima faster. Statistical efficiency of the new method has been investigated by running a large number of trajectories. The new method can locate low-energy structures of both the clusters faster than some of the reported algorithms for water clusters and can switch between high energy and low-energy structures multiple times in a simulation illustrating its efficiency. The large number of minima obtained from the simulations is used to get both general and specific features of the minima. The distribution of minima for these two clusters based on the similarity of their oxygen frames shows that the (H_2O)_(20) can have different variety of structures, but for (H_2O)_(25), low-energy structures are mostly cagelike. Several (H_2O) _(25) structures are found with similar energy but with different cage architectures. Noncage structures of (H_2O)_(25) are also found but they are 6-7 kcal/mol higher in energy from the global minimum. The TBP method is likely to play an important role for exploring the complex energy landscape of large molecules.
机译:对于任何优化算法而言,确定大型水团簇的低能结构都是一项挑战。在这项工作中,我们开发了一种新的基于蒙特卡洛(MC)的方法,即温度盆地摊铺(TBP),它与著名的盆地跳跃方法有关。在TBP方法中,基于模拟的历史记录,对MC方法中使用的玻尔兹曼加权因子进行了动态修改。通过提高温度,被访问更多的状态的概率较低,反之亦然。这样可以更快地摆脱仿真中经常访问的状态。我们已经使用TBP方法找到了许多大小为20和25的水团簇的低能极小值。我们发现了在能量上与这两个团簇的整体最小结构相同的结构。我们将这种方法的效率与盆地跳跃方法进行了比较,发现它可以更快地找到最小值。通过运行大量轨迹,研究了该新方法的统计效率。该新方法比两个已报告的水簇算法可以更快地找到两个簇的低能量结构,并且可以在模拟高效率和低能量结构的模拟中多次切换,以说明其效率。从仿真中获得的大量最小值用于获得最小值的一般特征和特定特征。基于这两个簇的氧框架相似性,其最小值的分布表明(H_2O)_(20)可以具有不同的结构多样性,但是对于(H_2O)_(25),低能结构大多为笼状。发现几种(H_2O)_(25)结构具有相似的能量,但具有不同的笼式结构。还发现了(H_2O)_(25)的非笼结构,但其能量比全局最小值高6-7 kcal / mol。 TBP方法可能对探索大分子的复杂能量格局起重要作用。

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