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首页> 外文期刊>The Journal of Chemical Physics >Communication: Accurate hydration free energies at a wide range of temperatures from 3D-RISM
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Communication: Accurate hydration free energies at a wide range of temperatures from 3D-RISM

机译:通讯:从3D-RISM到各种温度范围内的精确水合自由能

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摘要

We present a new model for computing hydration free energies by 3D reference interaction site model (3D-RISM) that uses an appropriate initial state of the system (as suggested by Sergiievskyi et al.). The new adjustment to 3D-RISM theory significantly improves hydration free energy predictions for various classes of organic molecules at both ambient and non-ambient temperatures. An extensive benchmarking against experimental data shows that the accuracy of the model is comparable to (much more computationally expensive) molecular dynamics simulations. The calculations can be readily performed with a standard 3D-RISM algorithm. In our work, we used an open source package AmberTools; a script to automate the whole procedure is available on the web (https://github.com/MTS-Strathclyde/ISc). (c) 2015 AIP Publishing LLC.
机译:我们提出了一个新的模型,用于通过3D参考相互作用位点模型(3D-RISM)计算水合自由能,该模型使用系统的适当初始状态(如Sergiievskyi等人所建议)。对3D-RISM理论的新调整显着改善了环境温度和非环境温度下各种有机分子类别的水合自由能预测。大量的针对实验数据的基准测试表明,该模型的准确性可与分子动力学模拟相媲美(在计算上更为昂贵)。可以使用标准3D-RISM算法轻松进行计算。在我们的工作中,我们使用了开源软件包AmberTools。可以在网上(https://github.com/MTS-Strathclyde/ISc)中找到一个脚本来自动化整个过程。 (c)2015 AIP Publishing LLC。

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