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首页> 外文期刊>The Journal of Chemical Physics >Simulations of vibrational spectra from classical trajectories:Calibration with ab initio force fields
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Simulations of vibrational spectra from classical trajectories:Calibration with ab initio force fields

机译:经典轨迹振动谱的仿真:从头算力场的校准

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摘要

An algorithm allowing simulating vibrational spectra from classical time-dependent trajectories was applied for infrared absorption,vibrational circular dichroism,Raman,and Raman optical activity of model harmonic systems.The implementation of the theory within the TINKER molecular dynamics(MD)program package was tested with ab initio harmonic force fields in order to determine the feasibility for more extended MD simulations.The results suggest that sufficiently accurate frequencies can be simulated with integration time steps shorter than about 0.5 fs.For a given integration time step,lower vibrational frequencies(~0-2000 cm~(-1))could be reproduced with a higher accuracy than higher-frequency vibrational modes(e.g.,O-H and C-H stretching).In principle,the algorithm also provides correct intensities for ideal systems.In applied simulations,however,the intensity profiles are affected by an unrealistic energy distribution between normal modes and a slow energy relaxation.Additionally,the energy fluctuations may cause weakening of the intensities on average.For ab initio force fields,these obstacles could be overcome by an arbitrary normal mode energy correction.For general MD simulations,averaging of many shorter MD trajectories started with randomly distributed atomic velocities provided the best spectral shapes,alpha-pinene,D-gluconic acid,formaldehyde dimer,and the acetylprolineamide molecule were used in the tests.
机译:在模型谐波系统的红外吸收,振动圆二色性,拉曼和拉曼光学活性方面应用了一种可模拟经典时变轨迹振动谱的算法。测试了该理论在TINKER分子动力学(MD)程序包中的实现。为了确定进行更多扩展MD仿真的可行性,我们从头计算谐波力场。结果表明,积分时间步长小于0.5 fs的情况下可以模拟足够准确的频率。对于给定的积分时间步长,较低的振动频率(〜相对于高频振动模式(例如OH和CH拉伸),可以以更高的精度复制0-2000 cm〜(-1)。从原理上讲,该算法还为理想系统提供了正确的强度。 ,强度分布受到正常模式之间不切实际的能量分布和缓慢的能量弛豫的影响。能量波动可能会平均削弱强度。对于从头算起的力场,可以通过任意的正态能量校正来克服这些障碍。对于常规的MD模拟,许多较短的MD轨迹的平均始于随机分布的原子速度,从而提供了测试中使用了最佳光谱形状,α-pine烯,D-葡萄糖酸,甲醛二聚体和乙酰基脯氨酸酰胺分子。

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