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首页> 外文期刊>The Journal of Chemical Physics >Efficient methods for finding transition states in chemical reactions:Comparison of improved dimer method and partitioned rational function optimization method
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Efficient methods for finding transition states in chemical reactions:Comparison of improved dimer method and partitioned rational function optimization method

机译:寻找化学反应中过渡态的有效方法:改进二聚体方法与分区有理函数优化方法的比较

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A combination of interpolation methods and local saddle-point search algorithms is probably the most efficient way of finding transition states in chemical reactions.Interpolation methods such as the growing-string method and the nudged-elastic band are able to find an approximation to the minimum-energy pathway and thereby provide a good initial guess for a transition state and imaginary mode connecting both reactant and product states.Since interpolation methods employ usually just a small number of configurations and converge slowly close to the minimum-energy pathway,local methods such as partitioned rational function optimization methods using either exact or approximate Hessians or minimum-mode-following methods such as the dimer or the Lanczos method have to be used to converge to the transition state.A modification to the original dimer method proposed by [Henkelman and Jonnson J.Chem.Phys.Ill,7010 (1999)] is presented,reducing the number of gradient calculations per cycle from six to four gradients or three gradients and one energy,and significantly improves the overall performance of the algorithm on quantum-chemical potential-energy surfaces,where forces are subject to numerical noise.A comparison is made between the dimer methods and the well-established partitioned rational function optimization methods for finding transition states after the use of interpolation methods.Results for 24 different small- to medium-sized chemical reactions covering a wide range of structural types demonstrate that the improved dimer method is an efficient alternative saddle-point search algorithm on medium-sized to large systems and is often even able to find transition states when partitioned rational function optimization methods fail to converge.
机译:插值方法和局部鞍点搜索算法的组合可能是查找化学反应中过渡态的最有效方法。插值方法(例如,增长弦法和微动弹性带)能够找到最小的近似值。 -能量途径,因此为连接反应物和产物状态的过渡态和虚模提供了良好的初始猜测。由于插值方法通常仅采用少量构型并缓慢收敛于最小能量途径,因此局部方法如使用精确或近似Hessian的分区有理函数优化方法或最小模式跟随方法(例如二聚体或Lanczos方法)收敛到过渡态。[Henkelman and Jonnson提出的对原始二聚体方法的修改[J.Chem.Phys.Ill,7010(1999)],减少了每个循环的梯度计算次数,六到四个梯度或三个梯度和一个能量,并显着提高了算法在量子化学势能表面上的整体性能,其中力受到数值噪声的影响。比较了二聚体方法和公认的方法使用插值方法寻找过渡态的分区有理函数优化方法。涉及各种结构类型的24种不同的中小型化学反应的结果表明,改进的二聚体方法是一种有效的替代鞍点搜索算法在中型到大型系统上,当分区有理函数优化方法无法收敛时,通常甚至能够找到过渡状态。

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