首页> 外文期刊>The Journal of Chemical Physics >Combining ab initio and density functional theoreies with semiempirical methods
【24h】

Combining ab initio and density functional theoreies with semiempirical methods

机译:从头算和密度泛函理论与半经验方法相结合

获取原文
获取原文并翻译 | 示例
           

摘要

For large reactive systems, the calculations of energies can be simplified by treating the active part with a high-level quantum mechanical (QM) (ab initio or density function) approach and the environment with a less sophisiticated semiempirical (SE) approach, as an improvement over the widely used hybrid quantum mechanical/molecular mechanical (QM/MM) methods. An example is the interaction between an active regin of an enzyme and its immediate environment. One such method is the original "Our-own-N-layer Integrated molecular Orbital + Molecular Mechanics (ONIOM)" approach. In this paper, the interaction between the QM and SE region is described explicity by two different schemes. In the iterative QM/SF schemes (QM/SE-I), the electrostatic interaction and polarization effects are introduced explicity for both the QM and SE atoms by a self-consisent procedure based on either polarizable point charges or the electron density. In the noniterative QM/SE scheme, based on the ONIOM model (QM/SE-O), the exchange (Pauli repulsion) and charge transfer effects are taken into account at the SE level, in addition to the explicit electrostatic interaction and polarization between the two regions. Test calculations are made on a number of model systems (including small polar or charged molecules interacting with water and proton transfer reactions in the presence of polar molecules or an extended hydrogen-bond network). The quantitative accuracy of the results depend on several parameters, such as the charge-scalingormalization facors for the SE charge and the QM/SE van der Waals parameters,which can be chosen to optimize the result. For the QM/SE-O approach, the reslts are more sensitive to the quality of the SE level (e.g., self-consistent-charge density-functional-tight-binding vs AM1) than the explicit interaction between QM and SE atoms.
机译:对于大型电抗系统,可以通过使用高阶量子力学(QM)方法(从头算或密度函数)将有源部件和较不复杂的半经验(SE)方法视为有源部件来简化能量计算。对广泛使用的混合量子力学/分子力学(QM / MM)方法的改进。一个例子是酶的活性区域与其直接环境之间的相互作用。一种这样的方法是原始的“我们自己的N层集成分子轨道+分子力学(ONIOM)”方法。在本文中,通过两种不同的方案明确描述了QM和SE区域之间的相互作用。在迭代QM / SF方案(QM / SE-1)中,通过基于可极化点电荷或电子密度的自洽程序,针对QM和SE原子明确引入了静电相互作用和极化效应。在非迭代QM / SE方案中,基于ONIOM模型(QM / SE-O),除了SE之间的显式静电相互作用和极化外,还考虑了SE级的交换(保利排斥)和电荷转移效应。这两个地区。在许多模型系统上进行测试计算(包括在极性分子或扩展的氢键网络存在下与水和质子转移反应相互作用的小的极性或带电分子)。结果的定量准确性取决于几个参数,例如SE电荷的电荷定标/归一化校正和QM / SE van der Waals参数,可以选择这些参数来优化结果。对于QM / SE-O方法,结果相对于SE原子的质量(例如自洽电荷密度-功能-紧密结合vs AM1)比QM和SE原子之间的显式相互作用更为敏感。

著录项

相似文献

  • 外文文献
  • 中文文献
  • 专利
获取原文

客服邮箱:kefu@zhangqiaokeyan.com

京公网安备:11010802029741号 ICP备案号:京ICP备15016152号-6 六维联合信息科技 (北京) 有限公司©版权所有
  • 客服微信

  • 服务号