首页> 外文期刊>Journal of Computational Chemistry: Organic, Inorganic, Physical, Biological >Scalable improvement of SPME multipolar electrostatics in anisotropic polarizable molecular mechanics using a general short-range penetration correction up to quadrupoles
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Scalable improvement of SPME multipolar electrostatics in anisotropic polarizable molecular mechanics using a general short-range penetration correction up to quadrupoles

机译:使用最多四极的一般短程渗透校正,可扩展地改善各向异性可极化分子力学中SPME多极静电学

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摘要

We propose a general coupling of the Smooth Particle Mesh Ewald SPME approach for distributed multipoles to a short-range charge penetration correction modifying the charge-charge, charge-dipole and charge-quadrupole energies. Such an approach significantly improves electrostatics when compared to ab initio values and has been calibrated on Symmetry-Adapted Perturbation Theory reference data. Various neutral molecular dimers have been tested and results on the complexes of mono- and divalent cations with a water ligand are also provided. Transferability of the correction is adressed in the context of the implementation of the AMOEBA and SIBFA polarizable force fields in the TINKER-HP software. As the choices of the multipolar distribution are discussed, conclusions are drawn for the future penetration-corrected polarizable force fields highlighting the mandatory need of non-spurious procedures for the obtention of well balanced and physically meaningful distributed moments. Finally, scalability and parallelism of the short-range corrected SPME approach are addressed, demonstrating that the damping function is computationally affordable and accurate for molecular dynamics simulations of complex bio- or bioinorganic systems in periodic boundary conditions. (c) 2016 Wiley Periodicals, Inc.
机译:我们提出了一种适用于分布式多极子的光滑粒子网格Ewald SPME方法与短距离电荷渗透校正的一般耦合,从而修改了电荷,电荷,偶极和四极能量。与从头算值相比,这种方法可显着改善静电,并已根据“适应对称性摄动理论”参考数据进行了校准。已经测试了各种中性分子二聚体,并且还提供了单价和二价阳离子与水配体的络合物的结果。在TINKER-HP软件中实施AMOEBA和SIBFA可极化力场的情况下,可以解决校正的可传递性问题。在讨论多极分布的选择时,得出了针对未来渗透校正的可极化力场的结论,强调了为确保平衡性和物理上有意义的分布矩而必须采用非虚假程序的要求。最后,解决了短程校正SPME方法的可扩展性和并行性,表明阻尼函数在周期性边界条件下对于复杂的生物或生物无机系统的分子动力学模拟具有计算上的承受能力和准确性。 (c)2016年威利期刊有限公司

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