首页> 外文期刊>Journal of chemical theory and computation: JCTC >Effects of a More Accurate Polarizable Hamiltonian on Polymorph Free Energies Computed Efficiently by Reweighting Point-Charge Potentials
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Effects of a More Accurate Polarizable Hamiltonian on Polymorph Free Energies Computed Efficiently by Reweighting Point-Charge Potentials

机译:更精确的可极化哈密顿量对通过加权点电荷电位有效计算的多晶型自由能的影响

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摘要

We examine the free energies of three benzene polymorphs as a function of temperature in the point-charge OPLS-AA and GROMOS54A7 potentials as well as the polarizable AMOEBA09 potential. For this system, using a polarizable Hamiltonian instead of the cheaper point-charge potentials is shown to have a significantly smaller effect on the stability at 250 K than on the lattice energy at 0 K. The benzene I polymorph is found to be the most stable crystal structure in all three potentials examined and at all temperatures examined. For each potential, we report the free energies over a range of temperatures and discuss the added value of using full free energy methods over the minimized lattice energy to determine the relative crystal stability at finite temperatures. The free energies in the polarizable Hamiltonian are efficiently calculated using samples collected in a cheaper point-charge potential. The polarizable free energies are estimated from the point-charge trajectories using Boltzmann reweighting with MBAR The high configuration-space overlap necessary for efficient Boltzmann reweighting is achieved by designing point-charge potentials with intramolecular parameters matching those in the expensive polarizable Hamiltonian. Finally, we compare the computational cost of this indirect reweighted free energy estimate to the cost of simulating directly in the expensive polarizable Hamiltonian.
机译:我们在点电荷OPLS-AA和GROMOS54A7电位以及可极化的AMOEBA09电位中检查了三种苯多晶型物的自由能随温度的变化。对于该系统,显示使用可极化的哈密顿量代替较便宜的点电荷电势,对250 K时的稳定性的影响明显小于对0 K时的晶格能量的影响。发现苯I多晶型最稳定在所有三个电势和所有温度下的晶体结构。对于每个电势,我们报告在一定温度范围内的自由能,并讨论了在最小晶格能量上使用完全自由能方法确定在有限温度下的相对晶体稳定性的附加值。可极化的哈密顿量中的自由能是使用以较便宜的点电荷电势收集的样本有效计算的。可极化的自由能是通过使用MBAR的玻尔兹曼重加权从点电荷轨迹估算的。有效的玻尔兹曼重加权所需的高配置空间重叠是通过设计分子内参数与昂贵的可极化哈密顿量中的那些匹配的点电荷电势来实现的。最后,我们将这种间接重新加权的自由能估计的计算成本与直接在昂贵的可极化哈密顿量中进行模拟的成本进行了比较。

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