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首页> 外文期刊>Journal of chemical theory and computation: JCTC >Vibrational Circular Dichroism Spectra for Large Molecules through Molecules-in-Molecules Fragment-Based Approach
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Vibrational Circular Dichroism Spectra for Large Molecules through Molecules-in-Molecules Fragment-Based Approach

机译:大分子的基于分子片段的振动圆二色谱光谱

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We present the first implementation of the vibrational circular dichroism (VCD) spectrum of large molecules through the Molecules-in-Molecules (MIM) fragment-based method. An efficient projection of the relevant higher energy derivatives from smaller fragments to the parent molecule enables the extension of the MIM method for the evaluation of VCD spectra (MIM-VCD). The overlapping primary subsystems in this work are constructed from interacting fragments using a number-based scheme and the dangling bonds are saturated with link hydrogen atoms. Independent fragment calculations are performed to evaluate the energies, Hessian matrix, atomic polar tensor (APT), and the atomic axial tensor (AAT). Subsequently, the link atom tensor components are projected back onto the corresponding host and supporting atoms through the Jacobian projection method, as in the ONIOM approach. In the two-layer model, the longrange interactions between fragments are accounted for using a less computationally intensive lower level of theory. The performance of the MIM model is calibrated on the D- and L-enantiomers of 10 carbohydrate benchmark molecules, with strong intramolecular interactions. The vibrational frequencies and VCD intensities are accurately reproduced relative to the full, unfragmented, results for these systems. In addition, the MIM-VCD method is employed to predict the VCD spectra of perhydrotriphenylene and cryptophane-A, yielding spectra in agreement with experiment. The accuracy and performance of the benchmark systems validate the MIM-VCD model for exploring vibrational circular dichroism spectra of large molecules.
机译:我们介绍了通过分子分子(MIM)片段为基础的方法的大分子振动圆二色性(VCD)光谱的第一个实现。从较小的片段到母体分子的相关高能衍生物的有效投影,使得可以扩展MIM方法来评估VCD光谱(MIM-VCD)。这项工作中重叠的主要子系统是使用基于数的方案由相互作用的片段构建而成的,并且悬空键被连接的氢原子饱和。执行独立的碎片计算以评估能量,Hessian矩阵,原子极性张量(APT)和原子轴向张量(AAT)。随后,像ONIOM方法一样,通过雅可比投影法将链接原子张量分量投影回相应的主体和支撑原子上。在两层模型中,使用较少的计算密集性较低的理论来解释片段之间的远程相互作用。 MIM模型的性能是通过10种碳水化合物基准分子的D和L对映异构体进行校准的,这些分子具有很强的分子内相互作用。相对于这些系统的完整,无碎片的结果,可以准确地再现振动频率和VCD强度。另外,采用MIM-VCD法预测了过氢三亚苯基和隐烷-A的VCD光谱,得出的光谱与实验吻合。基准系统的准确性和性能验证了MIM-VCD模型用于探索大分子的振动圆二色性光谱的能力。

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