首页> 外文期刊>Journal of chemical theory and computation: JCTC >Scalable High-Performance Algorithm for the Simulation of Exclton Dynamics. Application to the Light-Harvesting Complex II in the Presence of Resonant Vibrational Modes
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Scalable High-Performance Algorithm for the Simulation of Exclton Dynamics. Application to the Light-Harvesting Complex II in the Presence of Resonant Vibrational Modes

机译:用于Exclton动力学仿真的可扩展高性能算法。共振振动模态在光采复合体Ⅱ中的应用

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摘要

The accurate simulation of excitonic energy transfer in molecular complexes with coupled electronic and vibrational degrees of freedom is essential for comparing excitonic system parameters obtained from ab initio methods with measured time-resolved spectra. Several exact methods for computing the exciton dynamics within a density-matrix formalism are known but are restricted to small systems with less than 10 sites due to their computational complexity. To study the excitonic energy transfer in larger systems, we adapt and extend the exact hierarchical equation of motion (HEOM) method to various high-performance many-core platforms using the Open Compute Language (OpenCL). For the light-harvesting complex II (LHC II) found in spinach, the HEOM results deviate from predictions of approximate theories and clarify the time scale of the transfer process. We investigate the impact of resonantly coupled vibrations on the relaxation and show that the transfer does not rely on a fine-tuning of specific modes.
机译:具有耦合的电子自由度和振动自由度的分子复合物中激子能量转移的精确模拟对于将从头算方法获得的激子系统参数与测得的时间分辨光谱进行比较至关重要。已知几种在密度矩阵形式主义中计算激子动力学的精确方法,但由于其计算复杂性,它们仅限于少于10个站点的小型系统。为了研究大型系统中的激子能量传递,我们使用开放计算语言(OpenCL)将精确的运动分层方程(HEOM)方法改编并扩展到各种高性能的多核平台。对于菠菜中发现的光采复合物II(LHC II),HEOM结果偏离了近似理论的预测,并阐明了转移过程的时间尺度。我们研究了共振耦合振动对弛豫的影响,并表明该传递不依赖于特定模式的微调。

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