首页> 外文期刊>Journal of chemical theory and computation: JCTC >Bridging Static and Dynamical Descriptions of Chemical Reactions: An ab Initio Study of CO2 Interacting with Water Molecules
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Bridging Static and Dynamical Descriptions of Chemical Reactions: An ab Initio Study of CO2 Interacting with Water Molecules

机译:桥接化学反应的静态和动态描述:从头开始研究CO2与水分子相互作用

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Extracting reliable thermochemical parameters from molecular dynamics simulations of chemical reactions, although based on ab initio methods, is generally hampered by difficulties in reproducing the results and controlling the statistical errors. This is a serious drawback with respect to the quantum-chemical description based on potential energy surfaces. This work is an attempt to fill this gap. We apply molecular dynamics, based on density functional theory (DFT) and empowered by path metadynamics (MTD), to simulate the reaction of CO2 with (one, two, and three) water molecules in the gas phase. This study relies on a strategy that ensures a precise control of the accuracy of the reaction coordinates and of the reconstructed free-energy surface on this space, namely, on (i) fully reversible MTD simulations, (ii) a committor probability analysis for the diagnosis of the collective variables, and (iii) a cluster analysis for the characterization of the reconstructed free-energy surfaces. This robust procedure permits a meaningful comparison with more traditional calculations of the potential energy surfaces that we also perform within the same DFT computational scheme. This comparison shows in particular that the reactants and products of systems with only three water molecules can no longer be understood in terms of one structure but must be described as statistical configuration ensembles. Calculations carried out with different prescriptions for the exchange-correlation functionals also allow us to establish their quantitative effect on the activation barriers for the formation and the dissociation of carbonic acid. Their decrease induced by the addition of one water molecule (catalytic effect) is found to be largely independent of the specific functional.
机译:尽管基于从头算的方法,但是从化学反应的分子动力学模拟中提取可靠的热化学参数通常受到重现结果和控制统计误差的困难的困扰。就基于势能面的量子化学描述而言,这是一个严重的缺陷。这项工作是为了填补这一空白。我们基于密度泛函理论(DFT)并借助路径元动力学(MTD)来应用分子动力学,以模拟CO2与(一,二和三)水分子在气相中的反应。这项研究基于一种策略,该策略可确保精确控制该空间上反应坐标和重构自由能表面的准确性,即基于(i)完全可逆的MTD模拟,(ii)提交者概率分析。诊断集体变量,以及(iii)聚类分析,用于表征重构的自由能表面。这种健壮的过程可以与我们在相同DFT计算方案中也执行的势能面的更传统计算进行有意义的比较。这种比较特别地表明,仅具有三个水分子的系统的反应物和产物就不能再以一种结构来理解,而必须描述为统计构型集合。使用不同处方对交换相关功能进行的计算也使我们能够确定其对碳酸形成和解离的活化障碍的定量作用。发现通过添加一个水分子引起的它们的减少(催化作用)在很大程度上与特定的功能无关。

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