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首页> 外文期刊>Journal of chemical theory and computation: JCTC >High-Performance Solution of Hierarchical Equations of Motion for Studying Energy Transfer in Light-Harvesting Complexes
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High-Performance Solution of Hierarchical Equations of Motion for Studying Energy Transfer in Light-Harvesting Complexes

机译:分层运动方程的高性能解决方案,用于研究光收集复合体中的能量传递

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Exdtonic models of light-harvesting complexes, where the vibrational degrees of freedom are treated as a bath, are commonly used to describe the motion of the electronic excitation through a molecule. Recent experiments point toward the possibility of memory effects in this process and require one to consider time nonlocal propagation techniques. The hierarchical equations of motion (HEOM) were proposed by Ishizaki and Fleming to describe the site-dependent reorganization dynamics of protein environments (J. Chem. Phys. 2009,130,234111), which plays a significant role in photosynthetic electronic energy transfer. HBOM are often used as a reference for other approximate methods but have been implemented only for small systems due to their adverse computational scaling with the system size. Here, we show that HEOM are also solvable for larger systems, since the underlying algorithm is ideally suited for the usage of graphics processing units (GPU). The tremendous reduction in computational time due to the GPU allows us to perform a systematic study of the energy-transfer efficiency in the Fenna-Matthews-Olson (FMO) light-harvesting complex at physiological temperature under full consideration of memory effects. We find that approximative methods differ qualitatively and quantitatively from the HEOM results and discuss the importance of finite temperature to achieving high energy-transfer efficiencies.
机译:通常将振动自由度视为浴池的光采复合物的外渗模型来描述电子激发通过分子的运动。最近的实验指出在此过程中可能会产生记忆效应,因此需要考虑时间非局部传播技术。运动的分层方程(HEOM)由Ishizaki和Fleming提出,用于描述蛋白质环境的位点依赖重组动力学(J. Chem。Phys。2009,130​​,234111),在光合作用的电子能量转移中起着重要的作用。 HBOM通常被用作其他近似方法的参考,但由于其对系统规模的不利计算缩放,因此仅在小型系统中实现。在这里,我们证明了HEOM对于较大的系统也是可解决的,因为底层算法非常适合使用图形处理单元(GPU)。 GPU极大地减少了计算时间,这使我们能够在充分考虑记忆效应的情况下,对生理温度下的Fenna-Matthews-Olson(FMO)光采集复合体中的能量传输效率进行系统的研究。我们发现,近似方法在质量和数量上与HEOM结果不同,并讨论了有限温度对实现高能量传递效率的重要性。

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