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Transferability of Various Molecular Property Tensors in Vibrational Spectroscopy

机译:振动光谱中各种分子特性张量的可传递性

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Transfers of polarizability, dipole, and energy derivatives from smaller fragments enable extension of ab initio vibrational spectral simulations to larger molecules. The accuracy of the transfer, however, varies according to the molecule and the tensor type. Recent works (J. Chem. Theory Comput. 2011, 7, 1867 and Coll. Czech. Chem. Commun. 2011, 76, 567) questioned the accuracy of the tensor transfer for Raman optical activity (ROA) spectra. To estimate relative errors, the current study systematically compares transfer properties for four spectral types (ROA, Raman, vibrational circular dichroism (VCD), and infrared absorption (IR)). As test molecules, polyglycine and polyproline peptides in polyproline II and α-helical conformations were used. The results indicate that the discrepancies could be caused by variation of the transfer parameters but not by fundamental differences in the ROA tensor properties. In particular, when done consistently, the transferred electric and magnetic dipole derivatives, polarizability tensors, and harmonic force field provided a reasonable convergence of all spectra for transfers with increasing sizes of the fragments. The polarized spectroscopies (VCD and ROA), however, were found to be significantly more sensitive than the unpolarized (IR, Raman) ones. Optimization of the geometry and the character of the amino acid side chain was relatively unimportant for the transfer. On the other hand, intramolecular hydrogen bonds in the helix required larger fragments for the same accuracy than in an unfolded peptide. Nevertheless, with reasonable fragmentation, all the spectra (IR, VCD, Raman, and ROA) of the target structures could be reconstructed to an accuracy sufficient for a frill interpretation of the experiment, with substantial savings of computer time as an added benefit.
机译:来自较小碎片的极化率,偶极子和能量导数的转移使从头算振动光谱模拟扩展到较大的分子。但是,转移的精度根据分子和张量类型而变化。最近的著作(J. Chem。Theory Comput。2011,7,1867和Coll。Czech。Chem。Commun。2011,76,567)质疑张量转移对拉曼光学活性(ROA)光谱的准确性。为了估计相对误差,当前的研究系统地比较了四种光谱类型(ROA,拉曼,振动圆二色性(VCD)和红外吸收(IR))的传输特性。作为测试分子,使用了聚脯氨酸II和α螺旋构象的聚甘氨酸和聚脯氨酸肽。结果表明,差异可能是由传递参数的变化引起的,而不是由ROA张量特性的根本差异引起的。特别是,当一致地进行时,所转移的电和磁偶极导数,极化率张量和谐波力场为随着碎片尺寸增加而进行的转移提供了所有光谱的合理收敛。但是,发现偏振光谱(VCD和ROA)比非偏振光谱(IR,拉曼光谱)敏感得多。氨基酸侧链的几何形状和特征的优化对于转移而言相对不重要。另一方面,与未折叠的肽相比,相同精度的螺旋中分子内氢键需要更大的片段。尽管如此,通过合理的分割,目标结构的所有光谱(IR,VCD,拉曼和ROA)都可以重建到足够精确的精度,可以轻松地解释实验,同时还可以节省大量的计算机时间,这是一个额外的好处。

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