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Properties of water confined in hydroxyapatite nanopores as derived from molecular dynamics simulations

机译:分子动力学模拟推导的羟基磷灰石纳米孔中水的性质

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摘要

Bone tissue is characterized by nanopores inside the collagen-apatite matrix where fluid can exist and flow. The description of the fluid flow within the bone has however mostly relied on a macroscopic continuum mechanical treatment of the system, and, for this reason, the role of these nanopores has been largely overlooked. However, neglecting the nanoscopic behaviour of fluid within the bone volume could result in large errors in the overall description of the dynamics of fluid. In this work, we have investigated the nanoscopic origin of fluid motion by conducting atomistic molecular dynamics simulations of water confined between two parallel surfaces of hydroxyapatite (HAP), which is the main mineral phase of mammalian bone. The polarizable core-shell interatomic potential model used in this work to simulate the HAP-water system has been extensively assessed with respect to ab initio calculations and experimental data. The structural (pair distribution functions), dynamical (self-diffusion coefficients) and transport (shear viscosity coefficients) properties of confined water have been computed as a function of the size of the nanopore and the temperature of the system. Analysis of the results shows that the dynamical and transport properties of water are significantly affected by the confinement, which is explained in terms of the layering of water on the surface of HAP as a consequence of the molecular interactions between the water molecules and the calcium and phosphate ions at the surface. Using molecular dynamics simulations, we have also computed the slip length of water on the surface of HAP, the value of which has never been reported before.
机译:骨组织的特征是胶原-磷灰石基质内的纳米孔,在其中可以存在并流动。然而,对骨头内流体流动的描述主要取决于系统的宏观连续力学处理,因此,这些纳米孔的作用已被大大忽略。但是,忽略骨体积内流体的纳米行为可能会导致流体动力学总体描述中的重大错误。在这项工作中,我们通过对羟基磷灰石(HAP)(哺乳动物骨骼的主要矿物相)的两个平行表面之间的水进行原子分子动力学模拟,研究了流体运动的纳米起源。从头算和实验数据出发,已广泛评估了用于这项工作以模拟HAP-水系统的可极化核-壳间原子势模型。承压水的结构(对分布函数),动力学(自扩散系数)和传输(剪切粘度系数)特性已根据纳米孔的大小和系统温度进行了计算。对结果的分析表明,水的动力学和传输特性受到限制的显着影响,这可以通过水分子与钙和钙之间的分子相互作用而在HAP表面形成水来解释。表面的磷酸根离子。使用分子动力学模拟,我们还计算了HAP表面上水的滑移长度,其值从未有过报道。

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