Characterization of protein secondary structure from NMR chemical shifts

摘要

Glossary of abbreviations: ACS, averaged chemical shift; ACSESS, averaged chemical shifts to estimate secondary structure; BMRB, BioMagResBank; CATH, class, architecture, topology and homologous super family; CD, circular dichroism; COSY, correlated spectroscopy; CSI, chemical shift index; CSP, chemical shift pattern; DEFINE, determine the secondary and first level supersecondary structure; DSSP, database of secondary structure Predictions; HSQC, heteronucelar single quantum correlation; K–S test, Kolmogorov–Smirnov test; PDB, protein data bank; POP, prediction of proline; RCSB, research collaboratory for structural bioinformatics; RefDB, referenced database; SCOP, structural classification of proteins; SSC, secondary structure content; STRIDE, secondary structure assignment from atomic coordinates