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trans-1,2-Dicyano-cyclopropane and other cyano-cyclopropane derivatives

机译:反式1,2-二氰基环丙烷和其他氰基环丙烷衍生物

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In this work we present the experimental vibrational absorption (VA), vibrational circular dichroism (VCD) and Raman spectra for (+)-trans-1(S),2(S)-dicyanocyclopropane and its dideuterio derivative, trans-1(S),2(S)-dicyano-1(S),2(S)-dideuteriocyclopropane, along with VA, VCD, Raman and Raman optical activity (ROA) spectral simulations. Here we investigate the applicability of various local and non-local exchange-correlation (XC) functionals, hybrids and meta-hybrids to reproduce the vibrational spectra of this strained ring system, which also bears two cyano groups. At the highest level of theory, B3PW91/ aug-cc-pVTZ, we also investigated the trans-, cis- and gem-dicyanocyclopropane (trans-, cis-, and gem-DCCP), cyanocyclopropane (CCP) and the parent molecule cyclopropane (CP). In doing so we have investigated the electronic effects (coupling) between the cyano groups and the cyclopropane ring. In addition to providing an interpretation of the experimentally observed vibrational spectra for these molecules, this work also provides benchmark calculations for other methods, especially semi-empirical based wave function and density functional theory (DFT) based methods, such as SCC-DFTB and PM6. For the semi-empirical DFT based methods to be used for 3-membered ring systems, one ought to document their reliability for systems which were not used in the parameterization. The small 3- and 4-membered ring systems are good test systems because they contain non-standard bonding, which may be difficult to determine accurately with the approximations used in the SCC-DFTB and other semi-empirical methods. Like molecular mechanics force fields, semi-empirical methods, based on DFT and wave function quantum mechanics (WFQM), must be benchmarked against high level ab initio and DFT calculations and experimental data. In addition to bonding, the changes in the electric dipole moment, magnetic dipole moment, electric dipole-electric dipole polarizability, electric dipole-magnetic dipole polarizability and electric dipole-electric quadrupole polarizability with respect to nuclear displacement and nuclear velocity can be determined by the VA, VCD, Raman and ROA intensities. Hence it is important that the semi-empirical based DFT and wave function methods not only be parameterized to determine energies, gradients and Hessians, but also the electric and magnetic moments and their derivatives that determine the electronic and magnetic properties of these molecules and their interactions with matter and radiation. This will allow biochemists, biophysicists, molecular biologists, and physical biologists to use experimental and theoretical VA, VCD, Raman and ROA spectroscopies to probe biophysical and biochemical function and processes at the molecular level.
机译:在这项工作中,我们介绍了(+)-trans-1(S),2(S)-二氰基环丙烷及其二氘代衍生物trans-1(S)的实验振动吸收(VA),振动圆二色性(VCD)和拉曼光谱),2(S)-dicyano-1(S),2(S)-二氘代环丙烷,以及VA,VCD,拉曼和拉曼光学活性(ROA)光谱模拟。在这里,我们调查各种本地和非本地交换相关(XC)功能,杂种和元杂交的适用性,以重现此应变环系统的振动光谱,该系统还带有两个氰基。在最高的理论水平B3PW91 / aug-cc-pVTZ,我们还研究了反式,顺式和双-二氰基环丙烷(反式,顺式和双-DCCP),氰基环丙烷(CCP)和母体分子环丙烷(CP)。在此过程中,我们研究了氰基与环丙烷环之间的电子效应(耦合)。除了提供对这些分子的实验观察到的振动光谱的解释之外,这项工作还为其他方法提供了基准计算,尤其是基于半经验的波函数和基于密度泛函理论(DFT)的方法,例如SCC-DFTB和PM6 。对于用于三元环系统的基于半经验DFT的方法,应该证明其对于未在参数化中使用的系统的可靠性。小型3元和4元环系统是很好的测试系统,因为它们包含非标准键合,使用SCC-DFTB和其他半经验方法中的近似值可能难以准确确定。与分子力学力场一样,基于DFT和波函数量子力学(WFQM)的半经验方法必须以高水平的从头算和DFT计算和实验数据为基准。除键合外,相对于核位移和核速度的电偶极矩,磁偶极矩,电偶极-电偶极极化率,电偶极-磁偶极极化率和电偶极-电四极极化率的变化可以通过以下方法确定: VA,VCD,拉曼和ROA强度。因此,重要的是,基于半经验的DFT和波动函数方法不仅要参数化以确定能量,梯度和Hessian,而且还要确定决定这些分子的电子和磁性性质及其相互作用的电和磁矩及其导数与物质和辐射有关。这将使生物化学家,生物物理学家,分子生物学家和物理生物学家能够使用实验性和理论性的VA,VCD,拉曼和ROA光谱仪在分子水平上探测生物物理和生化功能和过程。

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