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Golgi enzymes that synthesize plant cell wall polysaccharides: finding and evaluating candidates in the genomic era

机译:合成植物细胞壁多糖的高尔基酶:在基因组时代寻找和评估候选者

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摘要

Although the synthesis of cell wall polysaccharides is a critical process during plant cell growth and differentiation, many of the wall biosynthetic genes have not yet been identified. This review focuses on the synthesis of non-cellulosic matrix polysaccharides formed in the Golgi apparatus. Our consideration is limited to two types of plant cell wall biosynthetic enzymes: glycan synthases and glycosyltransferases. Classical means of identifying these enzymes and the genes that encode them rely on biochemical purification of enzyme activity to obtain amino acid sequence data that is then used to identify the corresponding gene. This type of approach is difficult, especially when acceptor substrates for activity assays are unavailable, as is the case for many enzymes. However, bioinformatics and functional genomics provide powerful alternative means of identifying and evaluating candidate genes. Database searches using various strategies and expression profiling can identify candidate genes. The involvement of these genes in wall biosynthesis can be evaluated using genetic, reverse genetic, biochemical, and heterologous expression methods. Recent advances using these methods are considered in this review.
机译:尽管细胞壁多糖的合成是植物细胞生长和分化过程中的关键过程,但许多壁生物合成基因尚未被鉴定。这篇综述集中在高尔基体中形成的非纤维素基质多糖的合成。我们的考虑仅限于两种类型的植物细胞壁生物合成酶:聚糖合成酶和糖基转移酶。鉴定这些酶和编码这些酶的基因的经典方法依赖于酶活性的生物化学纯化,以获得氨基酸序列数据,然后将其用于鉴定相应的基因。这种类型的方法很困难,尤其是在没有用于活性测定的受体底物的情况下,就像许多酶一样。但是,生物信息学和功能基因组学提供了鉴定和评估候选基因的强大替代方法。使用各种策略和表达谱进行数据库搜索可以鉴定候选基因。这些基因在壁生物合成中的参与可以使用遗传,反向遗传,生化和异源表达方法进行评估。本文将考虑使用这些方法的最新进展。

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