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Validity of the Cauchy-Born rule applied to discrete cellular-scale models of biological tissues

机译:Cauchy-Born规则的有效性适用于生物组织的离散细胞规模模型

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The development of new models of biological tissues that consider cells in a discrete manner is becomingnincreasingly popular as an alternative to continuum methods based on partial differential equations, althoughnformal relationships between the discrete and continuum frameworks remain to be established. For crystalnmechanics, the discrete-to-continuum bridge is often made by assuming that local atom displacements can benmapped homogeneously from the mesoscale deformation gradient, an assumption known as the Cauchy-Bornnrule (CBR). Although the CBR does not hold exactly for noncrystalline materials, it may still be used as anfirst-order approximation for analytic calculations of effective stresses or strain energies. In this work, our goal isnto investigate numerically the applicability of the CBR to two-dimensional cellular-scale models by assessing thenmechanical behavior of model biological tissues, including crystalline (honeycomb) and noncrystalline referencenstates. The numerical procedure involves applying an affine deformation to the boundary cells and computingnthe quasistatic position of internal cells. The position of internal cells is then compared with the prediction of thenCBR and an average deviation is calculated in the strain domain. For center-based cell models, we show that thenCBR holds exactly when the deformation gradient is relatively small and the reference stress-free configurationnis defined by a honeycomb lattice.We show further that the CBR may be used approximately when the referencenstate is perturbed from the honeycomb configuration. By contrast, for vertex-based cell models, a similar analysisnreveals that the CBR does not provide a good representation of the tissue mechanics, even when the referencenconfiguration is defined by a honeycomb lattice. The paper concludes with a discussion of the implications ofnthese results for concurrent discrete and continuous modeling, adaptation of atom-to-continuum techniques tonbiological tissues, and model classification.
机译:作为基于偏微分方程的连续体方法的替代方法,考虑到以离散方式考虑细胞的生物组织新模型的开发正变得越来越受欢迎,尽管离散和连续体框架之间的形式关系尚待建立。对于晶体力学,离散到连续体桥通常是通过假设局部原子位移可以从中尺度变形梯度均匀地映射而完成的,该假设被称为柯西-波恩规则(Cuchy-Bornnrule,CBR)。尽管CBR不能完全适用于非晶材料,但仍可以用作有效应力或应变能的解析计算的一阶近似。在这项工作中,我们的目标是通过评估模型生物组织(包括晶状(蜂窝状)和非晶状参考状态)的力学行为,从数值上研究CBR在二维细胞规模模型中的适用性。数值过程包括对边界单元进行仿射变形并计算内部单元的准静态位置。然后将内部细胞的位置与thenCBR的预测进行比较,并在应变域中计算平均偏差。对于基于中心的单元模型,我们表明当变形梯度相对较小且由蜂窝晶格定义的无参考应力配置时,CBR完全成立。我们进一步表明,当参考状态受到振动时,CBR大约可以使用。蜂窝配置。相比之下,对于基于顶点的细胞模型,类似的分析表明,即使当参考配置由蜂窝晶格定义时,CBR也不能很好地代表组织力学。本文最后讨论了这些结果对并行离散和连续建模,原子到连续技术,生物医学组织的适应性以及模型分类的含义。

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  • 来源
    《PHYSICAL REVIEW E》 |2013年第4期|1-13|共13页
  • 作者单位

    Mathematical Institute University of Oxford 24-29 St Giles’ Oxford OX1 3LB United KingdomUniversit´e de Toulouse INPT UPS Institut de M´ecanique des Fluides de Toulouse All´ee Camille Soula F-31400 Toulouse FranceCNRS Institut de M´ecanique des Fluides de Toulouse F-31400 Toulouse France;

    Department of Computer Science University of Oxford Parks Road Oxford OX1 3QD United Kingdom;

    Mathematical Institute University of Oxford 24-29 St Giles’ Oxford OX1 3LB United KingdomDepartment of Computer Science University of Oxford Parks Road Oxford OX1 3QD United Kingdom;

    Department of Computer Science University of Oxford Parks Road Oxford OX1 3QD United Kingdom;

    Department of Computer Science University of Oxford Parks Road Oxford OX1 3QD United Kingdom;

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