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A comparative genomics multitool for scientific discovery and conservation

机译:一种对比基因组科学发现与保护

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摘要

A whole-genome alignment of 240 phylogenetically diverse species of eutherian mammal-including 131 previously uncharacterized species-from the Zoonomia Project provides data that support biological discovery, medical research and conservation.The Zoonomia Project is investigating the genomics of shared and specialized traits in eutherian mammals. Here we provide genome assemblies for 131 species, of which all but 9 are previously uncharacterized, and describe a whole-genome alignment of 240 species of considerable phylogenetic diversity, comprising representatives from more than 80% of mammalian families. We find that regions of reduced genetic diversity are more abundant in species at a high risk of extinction, discern signals of evolutionary selection at high resolution and provide insights from individual reference genomes. By prioritizing phylogenetic diversity and making data available quickly and without restriction, the Zoonomia Project aims to support biological discovery, medical research and the conservation of biodiversity.
机译:全基因组合对齐240个系统哺乳动物的养殖哺乳动物 - 包括131个以前的非特异性物种 - 来自Zoonomia项目提供了支持生物发现,医学研究和保护的数据。Zoonomia项目正在调查埃德兰人的共享和专业特征的基因组学哺乳动物。在这里,我们提供131种的基因组组件,其中除了9例之前的所有物种,并描述了240种相当大的系统发育多样性的全基因组对齐,包括来自80%以上的哺乳动物家族的代表。我们发现,遗传多样性降低的区域在灭绝的高风险中的种类上更加丰富,在高分辨率下辨别出进化选择的辨别信号,并提供各个参考基因组的见解。通过优先考虑系统发育多样性并快速提供数据,Zoonomia项目旨在支持生物发现,医学研究和生物多样性的保护。

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  • 来源
    《Nature 》 |2020年第7833期| 240-245| 共6页
  • 作者单位

    Broad Inst MIT & Harvard Cambridge MA 02142 USA;

    PRBB Inst Evolutionary Biol UPF CSIC Barcelona Spain;

    Univ Calif Santa Cruz UC Santa Cruz Genom Inst Santa Cruz CA 95064 USA;

    Broad Inst MIT & Harvard Cambridge MA 02142 USA;

    Uppsala Univ Dept Med Biochem & Microbiol Sci Life Lab Uppsala Sweden;

    Uppsala Univ Dept Med Biochem & Microbiol Sci Life Lab Uppsala Sweden;

    PRBB Inst Evolutionary Biol UPF CSIC Barcelona Spain;

    Stanford Univ Dept Biomed Data Sci Stanford CA 94305 USA|Stanford Univ Dept Comp Sci Stanford CA 94305 USA|Stanford Univ Dept Dev Biol Stanford CA 94305 USA|Stanford Univ Dept Pediat Stanford CA 94305 USA;

    Univ Liverpool Liverpool Sch Trop Med Ctr Snakebite Res & Intervent Liverpool Merseyside England;

    Beckman Ctr Conservat Res San Diego Zoo Global San Diego CA USA;

    Univ Calif Davis UC Davis Genome Ctr Davis CA 95616 USA;

    Univ East Anglia Dept Biol Sci Norwich Norfolk England|Earlham Inst Norwich Norfolk England;

    Univ Calif Santa Cruz UC Santa Cruz Genom Inst Santa Cruz CA 95064 USA;

    Univ Calif Santa Cruz UC Santa Cruz Genom Inst Santa Cruz CA 95064 USA;

    Univ Massachusetts Sch Med Program Bioinformat & Integrat Biol Worcester MA 01605 USA;

    Broad Inst MIT & Harvard Cambridge MA 02142 USA|Harvard Med Sch Brigham & Womens Hosp Boston MA 02115 USA;

    Broad Inst MIT & Harvard Cambridge MA 02142 USA|Stanford Univ Dept Biomed Data Sci Stanford CA 94305 USA|Fauna Bio Inc Emeryville CA USA;

    Earlham Inst Norwich Norfolk England;

    Beckman Ctr Conservat Res San Diego Zoo Global San Diego CA USA;

    Inst Syst Biol Seattle WA USA;

    Univ Cambridge Dept Biochem Cambridge England|Univ Helsinki Appl Tumor Genom Res Program Helsinki Finland;

    Smithsonian Mason Sch Conservat Front Royal VA USA;

    PRBB Inst Evolutionary Biol UPF CSIC Barcelona Spain;

    Broad Inst MIT & Harvard Cambridge MA 02142 USA|MIT Dept Biol Cambridge MA USA|Harvard Med Sch Dept Syst Biol Boston MA 02115 USA;

    Uppsala Univ Dept Med Biochem & Microbiol Sci Life Lab Uppsala Sweden;

    Texas A&M Univ Vet Integrat Biosci College Stn TX USA;

    Earlham Inst Norwich Norfolk England;

    Broad Inst MIT & Harvard Cambridge MA 02142 USA;

    Smithsonian Inst Marine Mammal Program Washington DC 20560 USA|Harvard Sch Dent Med Restorat Dent & Biomat Sci Boston MA USA|Case Western Reserve Univ Sch Dent Med Cleveland OH 44106 USA;

    Carnegie Mellon Univ Sch Comp Sci Dept Computat Biol Pittsburgh PA 15213 USA;

    Chan Zuckerberg Biohub San Francisco CA USA|Gladstone Inst San Francisco CA USA|Univ Calif San Francisco Dept Epidemiol & Biostat Inst Computat Hlth Sci San Francisco CA 94143 USA|Univ Calif San Francisco Inst Human Genet San Francisco CA 94143 USA;

    Texas Tech Univ Dept Sci Biol Lubbock TX 79409 USA;

    Univ Calif Santa Cruz Dept Ecol & Evolutionary Biol Santa Cruz CA 95064 USA|Univ Calif Santa Cruz Howard Hughes Med Inst Santa Cruz CA 95064 USA;

    Inst Syst Biol Seattle WA USA;

    Univ Calif Riverside Dept Evolut Ecol & Organismal Biol Riverside CA 92521 USA;

    Beckman Ctr Conservat Res San Diego Zoo Global San Diego CA USA;

    Broad Inst MIT & Harvard Cambridge MA 02142 USA;

    Univ Cambridge Dept Biochem Cambridge England|Univ Helsinki Appl Tumor Genom Res Program Helsinki Finland|Karolinska Inst Dept Med Biochem & Biophys Stockholm Sweden;

    Univ Coll Dublin Sch Biol & Environm Sci Dublin Ireland;

    Broad Inst MIT & Harvard Cambridge MA 02142 USA;

    Broad Inst MIT & Harvard Cambridge MA 02142 USA;

    Broad Inst MIT & Harvard Cambridge MA 02142 USA;

    Beckman Ctr Conservat Res San Diego Zoo Global San Diego CA USA|Univ Calif San Diego Div Biol Dept Evolut Behav & Ecol San Diego CA 92103 USA;

    Univ Calif Davis UC Davis Genome Ctr Davis CA 95616 USA|Univ Calif Davis Dept Evolut & Ecol Davis CA 95616 USA;

    Univ Calif Santa Cruz UC Santa Cruz Genom Inst Santa Cruz CA 95064 USA;

    PRBB Inst Evolutionary Biol UPF CSIC Barcelona Spain|Catalan Inst Res & Adv Studies ICREA Barcelona Spain|Univ Autonoma Barcelona Inst Catala Paleontol Miquel Crusafont Barcelona Spain|Barcelona Inst Sci & Technol BIST Ctr Genom Regulat CRG CNAG CRG Barcelona Spain;

    Broad Inst MIT & Harvard Cambridge MA 02142 USA|Uppsala Univ Dept Med Biochem & Microbiol Sci Life Lab Uppsala Sweden;

    Broad Inst MIT & Harvard Cambridge MA 02142 USA|Univ Massachusetts Sch Med Program Bioinformat & Integrat Biol Worcester MA 01605 USA|Univ Massachusetts Sch Med Program Mol Med Worcester MA 01605 USA;

  • 收录信息 美国《科学引文索引》(SCI);美国《工程索引》(EI);美国《生物学医学文摘》(MEDLINE);美国《化学文摘》(CA);
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