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Cope Elimination:Elucidation of Solvent Effects from QM/MM Simulations

机译:应对措施:从QM / MM模拟中阐明溶剂效果

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摘要

The Cope elimination reactions for threo- and erythro-N,N-dimethyl-3-phenyl-2-butylamine oxide have been investigated using QM/MM calculations in water,THF,and DMSO.The aprotic solvents provide up to million-fold rate accelerations.The effects of solvation on the reactants,transition structures,and rates of reaction are elucidated here using two-dimensional potentials of mean force (PMF) derived from free-energy perturbation calculations in Monte Carlo simulations (MC/FEP).The resultant free energies of activation in solution are in close agreement with experiment.Ab initio calculations at the MP2/6-311+G-(2d,p) level using the PCM continuum solvent model were also carried out;however,only the QM/MM methodology was able to reproduce the large rate increases in proceeding from water to the dipolar aprotic solvents.Solute-solvent interaction energies and radial distribution functions are also analyzed and show that poorer solvation of the reactant in the aprotic solvents is primarily responsible for the observed rate enhancements.It is found that the amine oxide oxygen is the acceptor of three hydrogen bonds from water molecules for the reactant but only one to two weaker ones at the transition state.The overall quantitative success of the computations supports the present QM/MM/MC approach,featuring PDDG/ PM3 as the QM method.
机译:使用水/四氢呋喃和DMSO中的QM / MM计算方法研究了苏-和N-N,N-二甲基-3-苯基-2-丁胺氧化物的Cope消除反应。非质子溶剂提供高达百万倍的速率使用蒙特卡罗模拟(MC / FEP)中的自由能摄动计算得出的二维平均力(PMF)势,阐明了溶剂化物对反应物,过渡结构和反应速率的影响。溶液中活化的自由能与实验非常吻合。还使用PCM连续溶剂模型进行了MP2 / 6-311 + G-(2d,p)级的从头算;但是,仅QM / MM该方法能够重现从水到偶极非质子传递溶剂过程中的大量增加。还分析了溶剂-溶剂相互作用能和径向分布函数,结果表明,在非质子传递溶剂中较弱的反应物溶剂化主要是因为结果表明,氧化胺是水分子中三个氢键的受主,但在过渡态时只有一到两个弱的氢键。 QM / MM / MC方法,以PDDG / PM3作为QM方法。

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  • 来源
    《Journal of the American Chemical Society》 |2006年第18期|p.6141-6146|共6页
  • 作者单位

    Contribution from the Department of Chemistry,Yale University,225 Prospect Street,New Haven,Connecticut 06520-8107;

    Contribution from the Department of Chemistry,Yale University,225 Prospect Street,New Haven,Connecticut 06520-8107;

  • 收录信息 美国《科学引文索引》(SCI);美国《工程索引》(EI);美国《生物学医学文摘》(MEDLINE);美国《化学文摘》(CA);
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类 化学;
  • 关键词

  • 入库时间 2022-08-18 03:22:40

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