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Quantum Chemical Calculations of Intramolecular Vibrational Redistribution and Energy Transfer of Dipeptides (GlyTyr and LeuTyr) and Applications to the RRKM Theory

机译:二肽(GlyTyr和LeuTyr)的分子内振动重新分布和能量转移的量子化学计算及其在RRKM理论中的应用

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摘要

Recently the quantum chemistry program can provide the anharmomc potentials tor polyatomic molecules and clusters. It makes the quantum calculation of intramlecular vibrational redistribution (IVR) rates and intramolecular vibrational energy transfer possible. In the present paper, we apply the adiabatic approximation method to treat these two intramolecular energy redistribution processes. Using this method, we calculate the IVR rates of the dipeptides (glycyl tyrosine (GlyTyr) and leucyl tyrosine (LeuTyr)) and their cation radicals from the high frequency modes to the low frequency modes. Our theoretical results of the IVR lifetimes of the high frequency modes, like C-H,N-H, and O-H stretching modes, for both GlyTyr and LeuTyr molecules and their cation radicals are about 1 ps, 10 ps, and 100 ps, respectively. It provides theoretical support for the claim that IVR takes place prior to dissociation and the IVR rates are determined by the functional group rather than the degrees of freedom of the system. Thus the Rice-Ramsperger-Kassel-Marcus (RRKM) theory is suitable for investigating the photodissociation process of dipeptides. In addition, the calculated intramolecular energy transfer rate from O-H stretching mode of the C-termius of dipeptides to N-H mode of N-terminus is close to IVR rate.
机译:最近,量子化学程序可以提供多原子分子和簇的非均质势。它使分子内振动重新分布(IVR)速率和分子内振动能量转移的量子计算成为可能。在本文中,我们采用绝热近似方法来处理这两个分子内能量的重新分配过程。使用这种方法,我们可以计算从高频模式到低频模式的二肽(甘氨酰酪氨酸(GlyTyr)和亮氨酰酪氨酸(LeuTyr))及其阳离子自由基的IVR速率。我们对GlyTyr和LeuTyr分子及其阳离子自由基的高频模式(如C-H,N-H和O-H拉伸模式)的IVR寿命的理论结果分别约为1 ps,10 ps和100 ps。它为IVR在解离之前发生且IVR速率由功能组而不是系统的自由度确定的说法提供了理论支持。因此,Rice-Ramsperger-Kassel-Marcus(RRKM)理论适用于研究二肽的光解离过程。另外,从二肽的C-末端的O-H拉伸模式到N-末端的N-H模式的分子内能量转移速率接近IVR速率。

著录项

  • 来源
    《Journal of the Chinese Chemical Society》 |2013年第7期|974-985|共12页
  • 作者单位

    Institute of Theoretical and Simulation Chemistry, Academy of Fundamental and Interdisciplinary Science, Harbin Institute of Technology, Harbin 150080, PR China ,Department of Applied Chemistry, Institute of Molecular Science and Center for Interdisciplinary Molecular Science, National Chiao-Tung University, Hsinchu 30050, Taiwan ,Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei, Taiwan;

    Department of Applied Chemistry, Institute of Molecular Science and Center for Interdisciplinary Molecular Science, National Chiao-Tung University, Hsinchu 30050, Taiwan;

    Department of Applied Chemistry, Institute of Molecular Science and Center for Interdisciplinary Molecular Science, National Chiao-Tung University, Hsinchu 30050, Taiwan;

    Department of Applied Chemistry, Institute of Molecular Science and Center for Interdisciplinary Molecular Science, National Chiao-Tung University, Hsinchu 30050, Taiwan ,Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei, Taiwan;

    Department of Applied Chemistry, Institute of Molecular Science and Center for Interdisciplinary Molecular Science, National Chiao-Tung University, Hsinchu 30050, Taiwan ,Center for Condensed Matter Sciences, National Taiwan University, Taipei, Taiwan;

    College of Chemistry, Beijing Normal University, Beijing 100875, PR China;

    Department of Applied Chemistry, Institute of Molecular Science and Center for Interdisciplinary Molecular Science, National Chiao-Tung University, Hsinchu 30050, Taiwan ,Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei, Taiwan;

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  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

    Vibrational redistribution rate; Energy transfer; Dipeptides;

    机译:振动再分配率;能量转移;二肽;

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