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Training deep segmentation networks on texture-encoded input application to neuroimaging of the developing neonatal brain

机译:培养纹理编码输入应用的深度分割网络,以发育新生大脑的神经瘤

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Standard practice for using convolutional neural networks (CNNs) in semantic segmentation tasks assumes that the image intensities are directly used for training and inference. In natural images this is performed using RGB pixel intensities, whereas in medical imaging, e.g. magnetic resonance imaging (MRI), gray level pixel intensities are typically used. In this work, we explore the idea of encoding the image data as local binary textural maps prior to the feeding them to CNNs, and show that accurate segmentation models can be developed using such maps alone, without learning any representations from the images themselves. This questions common consensus that CNNs recognize objects from images by learning increasingly complex representations of shape, and suggests a more important role to image texture, in line with recent findings on natural images. We illustrate this for the first time on neuroimaging data of the developing neonatal brain in a tissue segmentation task, by analyzing large, publicly available T2-weighted MRI scans (n=558, range of postmenstrual ages at scan: 24.3 - 42.2 weeks) obtained retrospectively from the {em Developing Human Connectome Project} cohort. Rapid changes in visual characteristics that take place during early brain development make it important to establish a clear understanding of the role of visual texture when training CNN models on neuroimaging data of the neonatal brain; this yet remains a largely understudied but important area of research. From a deep learning perspective, the results suggest that CNNs could simply be capable of learning representations from structured spatial information, and may not necessarily require conventional images as input.
机译:在语义分割任务中使用卷积神经网络(CNNS)的标准做法假定图像强度直接用于训练和推理。在自然图像中,这是使用RGB像素强度进行的,而在医学成像中,例如,磁共振成像(MRI)通常使用灰度级像素强度。在这项工作中,我们探讨将图像数据编码为局部二进制纹理地图之前的想法,并在将它们馈送到CNN之前,并显示可以单独使用这种映射开发准确的分段模型,而不从图像本身学习任何表示。这一问题是通过学习越来越复杂的形状表示,CNNS从图像中识别对象的常见共识,并对图像纹理表达更重要的作用,符合自然图像上最近的发现。我们首次说明了在组织分割任务中发育新生儿大脑的神经影像脑的神经影像数据的第一次,通过分析大,公开可用的T2加权MRI扫描(N = 558,扫描中的后期年龄的范围:24.3-22.2周)回顾性地从{ em开发人类连接项目}队列。在早期大脑发展期间发生的视觉特征的快速变化使得在培训新生儿脑的神经影像数据中的CNN模型时,可以清楚地了解视觉纹理的作用;然而,这仍然是一个很大程度上是深入的,但重要的研究领域。从深度学习的角度来看,结果表明CNN可以简单地能够从结构化空间信息学习表示,并且可能不一定需要传统的图像作为输入。

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