Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection

摘要

This data article reportsde novotranscriptome analysis of resistant wildAsparagus kiusianusand susceptibleA. officinalisplants 24 and 48?h post-inoculation (24 and 48 hpi) withPhomopsis asparagi. Differential gene expression (DGE) analysis demonstrated that several genes involved in secondary metabolites and plant-pathogen interactions are up-regulated in resistant wildA. kiusianusrelative to susceptibleA. officinalis. The assembled contig sequences generated in this study were used to search single nucleotide polymorphism (SNP) and insertion/deletion (InDel) distribution inA. kiusianusandA. officinalisplants. SNP and InDel data developed from this transcriptome analysis will be used to generate a high-density linkage map to facilitate further development of molecular marker-assisted selection inA. officinalis.