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GourdBase: a genome-centered multi-omics database for the bottle gourd ( Lagenaria siceraria ), an economically important cucurbit crop

机译:GourdBase:葫芦(Lagenaria siceraria)(一种经济上重要的葫芦类作物)的基因组中心多组学数据库

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GourdBase is an integrative data platform for the bottle gourd to examine its multifarious intuitive morphology and annotated genome. GourdBase consists of six main modules that store and interlink multi-omic data: the genome (with transcriptomic data integrated) module, the phenome module, the markers/QTLs module, the maps (genetic, physical and comparative) module, the cultivars module, and the publications module. These modules provide access to various type of data including the annotated reference genome sequence, gene models, transcriptomic data from various tissues, physical and comparative genome maps, molecular markers in different types, phenotypic data for featuring traits including fruit shape and umami taste, and quantitative trait loci (QTLs) that underlie these traits. GourdBase is intuitive, user-friendly and interlinked and is designed to allow researchers, breeders and trained farmers to browse, search and fetch information on interests and assist in genomics-driven studies and breeding. The knowledge base and web interface can be accessed at .
机译:GourdBase是葫芦的综合数据平台,可用于检查葫芦的多种直观形态和带注释的基因组。 GourdBase包含六个主要模块,用于存储和互连多组学数据:基因组(整合了转录组数据)模块,表型模块,标记/ QTL模块,图谱(遗传,物理和比较),品种模块,和出版物模块。这些模块可访问各种类型的数据,包括带注释的参考基因组序列,基因模型,来自各种组织的转录组数据,物理和比较基因组图谱,不同类型的分子标志物,表型数据,这些特征具有包括水果形状和鲜味的特征,以及这些特征基础的数量性状基因座(QTL)。 GourdBase直观,易于使用且相互关联,旨在使研究人员,育种者和受过培训的农民能够浏览,搜索和获取有关兴趣的信息,并协助进行基因组学驱动的研究和育种。知识库和Web界面可以从访问。

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