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Blind Depth-variant Deconvolution of 3D Data in Wide-field Fluorescence Microscopy

机译:广域荧光显微镜中3D数据的盲深度变化反卷积

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This paper proposes a new deconvolution method for 3D fluorescence wide-field microscopy. Most previous methods are insufficient in terms of restoring a 3D cell structure, since a point spread function (PSF) is simply assumed as depth-invariant, whereas a PSF of microscopy changes significantly along the optical axis. A few methods that consider a depth-variant PSF have been proposed; however, they are impractical, since they are non-blind approaches that use a known PSF in a pre-measuring condition, whereas an imaging condition of a target image is different from that of the pre-measuring. To solve these problems, this paper proposes a blind approach to estimate depth-variant specimen-dependent PSF and restore 3D cell structure. It is shown by experiments on that the proposed method outperforms the previous ones in terms of suppressing axial blur. The proposed method is composed of the following three steps: First, a non-parametric averaged PSF is estimated by the Richardson Lucy algorithm, whose initial parameter is given by the central depth prediction from intensity analysis. Second, the estimated PSF is fitted to Gibson's parametric PSF model via optimization, and depth-variant PSFs are generated. Third, a 3D cell structure is restored by using a depth-variant version of a generalized expectation-maximization.
机译:本文提出了一种用于3D荧光宽视场显微镜的新解卷积方法。就恢复3D单元结构而言,大多数先前的方法是不够的,因为仅将点扩展函数(PSF)假定为深度不变的,而显微镜的PSF沿光轴会发生显着变化。已经提出了一些考虑深度变化的PSF的方法。然而,它们是不切实际的,因为它们是在预测量条件下使用已知PSF的非盲方法,而目标图像的成像条件与预测量的条件不同。为了解决这些问题,本文提出了一种盲法来估计依赖于深度变化的标本的PSF并恢复3D细胞结构。实验表明,该方法在抑制轴向模糊方面优于传统方法。所提出的方法包括以下三个步骤:首先,通过Richardson Lucy算法估计非参数平均PSF,其初始参数由强度分析的中心深度预测给出。其次,通过优化将估计的PSF拟合到Gibson的参数PSF模型中,并生成深度变化的PSF。第三,通过使用广义期望最大化的深度变化版本来恢复3D单元结构。

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