首页> 外文期刊>Journal of Clinical Microbiology >Identification of Leishmania by Matrix-Assisted Laser Desorption Ionization–Time of Flight (MALDI-TOF) Mass Spectrometry Using a Free Web-Based Application and a Dedicated Mass-Spectral Library
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Identification of Leishmania by Matrix-Assisted Laser Desorption Ionization–Time of Flight (MALDI-TOF) Mass Spectrometry Using a Free Web-Based Application and a Dedicated Mass-Spectral Library

机译:使用免费的基于Web的应用程序和专用质谱库通过基质辅助激光解吸电离-飞行时间(MALDI-TOF)质谱鉴定利什曼原虫

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Human leishmaniases are widespread diseases with different clinical forms caused by about 20 species within the Leishmania genus. Leishmania species identification is relevant for therapeutic management and prognosis, especially for cutaneous and mucocutaneous forms. Several methods are available to identify Leishmania species from culture, but they have not been standardized for the majority of the currently described species, with the exception of multilocus enzyme electrophoresis. Moreover, these techniques are expensive, time-consuming, and not available in all laboratories. Within the last decade, mass spectrometry (MS) has been adapted for the identification of microorganisms, including Leishmania. However, no commercial reference mass-spectral database is available. In this study, a reference mass-spectral library (MSL) for Leishmania isolates, accessible through a free Web-based application (mass-spectral identification [MSI]), was constructed and tested. It includes mass-spectral data for 33 different Leishmania species, including species that infect humans, animals, and phlebotomine vectors. Four laboratories on two continents evaluated the performance of MSI using 268 samples, 231 of which were Leishmania strains. All Leishmania strains, but one, were correctly identified at least to the complex level. A risk of species misidentification within the Leishmania donovani, L. guyanensis, and L. braziliensis complexes was observed, as previously reported for other techniques. The tested application was reliable, with identification results being comparable to those obtained with reference methods but with a more favorable cost-efficiency ratio. This free online identification system relies on a scalable database and can be implemented directly in users' computers.
机译:人类利什曼原虫病是由利什曼原虫属中约20种引起的具有不同临床形式的广泛疾病。利什曼原虫物种鉴定与治疗管理和预后有关,特别是对于皮肤和粘膜皮肤形式。有几种方法可以从培养物中鉴定利什曼原虫种类,但除多基因座酶电泳外,目前尚未对大多数目前描述的种类进行标准化。而且,这些技术昂贵,费时并且并非在所有实验室中都可用。在过去的十年中,质谱(MS)已用于鉴定包括利什曼原虫在内的微生物。但是,没有商业参考质谱数据库。在这项研究中,构建并测试了利什曼原虫分离株的参考质谱库(MSL),可通过基于Web的免费应用程序(质谱识别[MSI])进行访问。它包括33种不同的利什曼原虫物种的质谱数据,其中包括感染人类,动物和phlebotomine载体的物种。两大洲的四个实验室使用268个样品评估了MSI的性能,其中231个是利什曼原虫菌株。除一株外,所有利什曼原虫菌株均已正确鉴定,至少达到了复杂水平。如先前在其他技术中所报道的,在利什曼原虫,多哥L. Guyanensis和巴西L. braziliensis复合物中存在物种错误识别的风险。经测试的应用程序是可靠的,其识别结果与参考方法所获得的结果相当,但具有更高的成本效率比。这个免费的在线身份识别系统依靠可扩展的数据库,可以直接在用户的计算机中实现。

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