Design and Development of Grid Enabled, G2PU Accelerated Java Application (Protein Sequence Study) for Grid Performance Analysis

摘要

Recent advancement in the field of structural biology has generated huge volume of data and analyzing such data is vital to know the hidden truths of life but such analysis is compute intensive in nature and requires huge computational power resulting in extensive use of high performance computing (Multi Core Computing, G2PU Computing, CPU-GPU Hybrid computing, Cluster, Grid) models. Grid is one of the widely used HPC model which is commonly used in computational biology and to execute a compute intensive tasks on grid, the applications must also be grid enabled. Performance of grid depends on appropriate selection of load balancing strategy (at server and node level) and maximum utilization of computational resources of nodes (multiple cores of CPU and execution units of GPU) by the grid enabled applications. In this paper an attempt has been made to establish an experimental grid, develop a grid enabled application and to operate the grid with its highest possible performance by the grid enabled applications.