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Host Association of Campylobacter Genotypes Transcends Geographic Variation

机译:弯曲杆菌基因型的宿主协会超越地理变异

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Genetic attribution of bacterial genotypes has become a major tool in the investigation of the epidemiology of campylobacteriosis and has implicated retail chicken meat as the major source of human infection in several countries. To investigate the robustness of this approach to the provenance of the reference data sets used, a collection of 742 Campylobacter jejuni and 261 Campylobacter coli isolates obtained from United Kingdom-sourced chicken meat was established and typed by multilocus sequence typing. Comparative analyses of the data with those from other isolates sourced from a variety of host animals and countries were undertaken by genetic attribution, genealogical, and population genetic approaches. The genotypes from the United Kingdom data set were highly diverse, yet structured into sequence types, clonal complexes, and genealogical groups very similar to those seen in chicken isolates from the Netherlands, the United States, and Senegal, but more distinct from isolates obtained from ruminant, swine, and wild bird sources. Assignment analyses consistently grouped isolates from different host animal sources regardless of geographical source; these associations were more robust than geographic associations across isolates from three continents. We conclude that, notwithstanding the high diversity of these pathogens, there is a strong signal of association of multilocus genotypes with particular hosts, which is greater than the geographic signal. These findings are consistent with local and international transmission of host-associated lineages among food animal species and provide a foundation for further improvements in genetic attribution.
机译:细菌基因型的遗传归因已成为调查弯曲菌流行病学的主要工具,并暗示零售鸡肉是人类感染人类的​​主要来源。为了研究这种方法对所用参考数据集来源的鲁棒性,建立了从英国来源的鸡肉中获得的742个空肠弯曲杆菌和261个弯曲杆菌分离株的集合,并通过多基因座序列分型进行了分型。通过遗传归因,族谱和种群遗传学方法对数据与来自多种宿主动物和国家的其他分离株的数据进行了比较分析。来自英国数据集的基因型高度多样,但结构化成序列类型,克隆复合体和族谱组,与在荷兰,美国和塞内加尔的鸡分离株中所见的非常相似,但与从反刍动物,猪和野生鸟类的来源。分配分析对来自不同宿主动物来源的分离株进行了统一分组,无论其地理来源如何;这些关联比来自三大洲的隔离株的地理关联更强大。我们得出的结论是,尽管这些病原体具有很高的多样性,但仍存在一个多位点基因型与特定宿主相关的强烈信号,该信号大于地理信号。这些发现与食用动物物种之间宿主相关谱系在本地和国际上的传播是一致的,并为进一步改善遗传归因提供了基础。

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