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Mine, Yours, Ours? Sharing Data on Human Genetic Variation

机译:我的,你的,我们的?共享人类遗传变异数据

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The achievement of a robust, effective and responsible form of data sharing is currently regarded as a priority for biological and bio-medical research. Empirical evaluations of data sharing may be regarded as an indispensable first step in the identification of critical aspects and the development of strategies aimed at increasing availability of research data for the scientific community as a whole. Research concerning human genetic variation represents a potential forerunner in the establishment of widespread sharing of primary datasets. However, no specific analysis has been conducted to date in order to ascertain whether the sharing of primary datasets is common-practice in this research field. To this aim, we analyzed a total of 543 mitochondrial and Y chromosomal datasets reported in 508 papers indexed in the Pubmed database from 2008 to 2011. A substantial portion of datasets (21.9%) was found to have been withheld, while neither strong editorial policies nor high impact factor proved to be effective in increasing the sharing rate beyond the current figure of 80.5%. Disaggregating datasets for research fields, we could observe a substantially lower sharing in medical than evolutionary and forensic genetics, more evident for whole mtDNA sequences (15.0% vs 99.6%). The low rate of positive responses to e-mail requests sent to corresponding authors of withheld datasets (28.6%) suggests that sharing should be regarded as a prerequisite for final paper acceptance, while making authors deposit their results in open online databases which provide data quality control seems to provide the best-practice standard. Finally, we estimated that 29.8% to 32.9% of total resources are used to generate withheld datasets, implying that an important portion of research funding does not produce shared knowledge. By making the scientific community and the public aware of this important aspect, we may help popularize a more effective culture of data sharing.
机译:目前,实现健壮,有效和负责任的数据共享形式被视为生物和生物医学研究的优先事项。在确定关键方面和制定旨在提高整个科学界的研究数据可用性的策略的过程中,对数据共享进行经验评估可能被视为必不可少的第一步。有关人类遗传变异的研究是建立广泛共享主要数据集的潜在先驱。但是,迄今为止,尚未进行任何具体的分析来确定主要数据集的共享是否是该研究领域的普遍做法。为此,我们分析了2008年至2011年在Pubmed数据库中检索到的508篇论文中报告的543个线粒体和Y染色体数据集。发现很大一部分数据集(21.9%)被保留,而没有强有力的编辑政策事实证明,高影响因子也无法有效地将分享率提高到当前的80.5%以上。分解研究领域的数据集,我们可以发现医学上的共享率远低于进化和法医遗传学,在整个mtDNA序列中更为明显(15.0%对99.6%)。发送给保留数据集的相应作者的电子邮件请求的积极响应率低(28.6%),这表明共享应被视为最终论文接受的先决条件,同时使作者将其结果存储在可提供数据质量的开放式在线数据库中控制似乎提供了最佳实践标准。最后,我们估计总资源的29.8%至32.9%用于生成保留的数据集,这意味着研究经费的重要部分不会产生共享的知识。通过使科学界和公众意识到这一重要方面,我们可以帮助普及更有效的数据共享文化。

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